Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

640654 .. 640965

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCGATGGATTTTATTAACTTGGGAAGCAAGCAATCAAGCTCAAATTATCCACGTTTGAGATGCTTTGATATGTTTATGTTACACTCGTGGGCAGGAGGGTTAACTGAATTCCGGGACGGGCGTAATCAAGGGAGCACAACCGAGGCACTGAATGCGTACTACTCAGCCGCATTGATGGGGTTAACGTATGGAGATGACGATCTTGTTGCCACAGGATCAATGCTTGCGGCATTGGAAATGCATGCAACGAAAGTTTGGTGGCACGTAAAAGAGAGAGAGAATGTACGAGGGAGATTTTTCGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

104

Amino Acids

11.71

Weight (kDa)

5.55

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	4 - 98	1.1e-26	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	171, 230
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	2 cut(s)	161, 288
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	116
BauI	CACGAG	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	140
BccI	CCATC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcnI	CCSGG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	171, 231
BlsI	GCNGC	2 cut(s)	172, 232
Bme1390I	CCNGG	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	116
BsaAI	YACGTR	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	202, 218
BspACI	CCGC	2 cut(s)	171, 230
BspCNI	CTCAG	1 cut(s)	179
BspPI	GGATC	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	202, 218
BssSI	CACGAG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	32, 228, 246
BstDEI	CTNAG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	205, 221
BstMBI	GATC	2 cut(s)	202, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	3 cut(s)	32, 228, 246
Csp6I	GTAC	2 cut(s)	160, 287
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	2 cut(s)	42, 170
CviKI_1	RGCY	2 cut(s)	42, 170
CviQI	GTAC	2 cut(s)	160, 287
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	2 cut(s)	204, 220
DpnII	GATC	2 cut(s)	202, 218
EcoRI	GAATTC	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	246
FaeI	CATG	1 cut(s)	248
FaiI	YATR	4 cut(s)	74, 80, 192, 246
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	171, 231
Fsp4HI	GCNGC	2 cut(s)	171, 231
GluI	GCNGC	2 cut(s)	171, 231
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	2 cut(s)	105, 186
HindII	GTYRAC	2 cut(s)	105, 186
HpaI	GTTAAC	2 cut(s)	105, 186
HpaII	CCGG	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	105, 186
Hpy8I	GTNNAC	2 cut(s)	105, 186
HpyCH4IV	ACGT	3 cut(s)	55, 188, 267
HpyCH4V	TGCA	2 cut(s)	244, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	3 cut(s)	55, 188, 267
Hsp92II	CATG	1 cut(s)	248
KspAI	GTTAAC	2 cut(s)	105, 186
Kzo9I	GATC	2 cut(s)	202, 218
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	3 cut(s)	81, 128, 201
LweI	GCATC	1 cut(s)	53
MaeII	ACGT	3 cut(s)	55, 188, 267
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	2 cut(s)	204, 220
MboI	GATC	2 cut(s)	202, 218
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	2 cut(s)	46, 110
MnlI	CCTC	4 cut(s)	92, 139, 284, 298
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	3 cut(s)	18, 104, 185
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	202, 218
NlaIII	CATG	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	248
PctI	GAATGC	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	172, 232
Ppu21I	YACGTR	1 cut(s)	268
RsaI	GTAC	2 cut(s)	161, 288
RsaNI	GTAC	2 cut(s)	160, 287
SaqAI	TTAA	3 cut(s)	18, 104, 185
SatI	GCNGC	2 cut(s)	171, 231
Sau3AI	GATC	2 cut(s)	202, 218
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	4 cut(s)	44, 58, 191, 270
SfaNI	GCATC	1 cut(s)	53
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	46, 110
SsiI	CCGC	2 cut(s)	171, 230
StyD4I	CCNGG	1 cut(s)	114
TaiI	ACGT	3 cut(s)	58, 191, 270
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	46, 110
TauI	GCSGC	2 cut(s)	173, 233
Tru1I	TTAA	3 cut(s)	18, 104, 185
Tru9I	TTAA	3 cut(s)	18, 104, 185
TscAI	CASTG	1 cut(s)	156
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.