Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

56892622 .. 56893155

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATATATCCCTCCCACGTCATCTCAGCCTTCGATGACCTCAGCATCACCCTTGACTTCCCATCCTCCAATCTCACATTCCCTCTCGTCCGGGGAAGCCCATATCTCACATTCTCTGTTTCGAACCAGACCTCAATAATATCACTCTCAACCATCCACGCCATTCTATCTTTCTCTTCGAATCAAGATCACACCAAGCACACCATCAAGCTCAATAACGATCAGACATGGCTGGTCTACACCTCTTCGCAGATCCATTTGACTAACCACAACTTGTCTGTGATTACCTCTTCTGGGTTATCCGGCATTGTGAGAGTTGCAGTGCTGCCGGACCCAGAATCCGAGGCTGCCCTTGATCAGTTCAGCTCTCGCTACCCATTTTCGGGTGAGGCTGTGTTCGGAGATGGGTTTAATTTGGAGTATAAGTGGGAAGCAAAAGGGTCTGGGGATTTGCTTATGCTGGCTCATCCTCTACATGTGAACCTTCTTAAGAATGATGACAATGTGGCTTTTTTGGAGGGTGTTAACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

177

Amino Acids

19.44

Weight (kDa)

5.11

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_81	PF03639	5 - 169	3.1e-36	Glycosyl hydrolase family 81 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	247
AfiI	CCNNNNNNNGG	3 cut(s)	294, 382, 383
AflII	CTTAAG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	475
AjiI	CACGTC	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	2 cut(s)	211, 366
AluI	AGCT	2 cut(s)	211, 366
AlwI	GGATC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	325, 347
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	40, 398
AsuII	TTCGAA	2 cut(s)	122, 179
AvaII	GGWCC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	312, 334
BccI	CCATC	4 cut(s)	70, 161, 212, 398
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	2 cut(s)	326, 348
BlsI	GCNGC	2 cut(s)	327, 349
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	331
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	2 cut(s)	122, 179
BpuMI	CCSGG	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	91, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 382, 383
BseDI	CCNNGG	2 cut(s)	91, 342
BseGI	GGATG	3 cut(s)	62, 153, 466
BseLI	CCNNNNNNNGG	3 cut(s)	294, 382, 383
BseMII	CTCAG	2 cut(s)	39, 55
BseXI	GCAGC	2 cut(s)	312, 334
BsiSI	CCGG	3 cut(s)	91, 303, 329
BslI	CCNNNNNNNGG	3 cut(s)	294, 382, 383
Bsp119I	TTCGAA	2 cut(s)	122, 179
Bsp143I	GATC	4 cut(s)	187, 220, 252, 355
BspCNI	CTCAG	2 cut(s)	38, 54
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	247
BspT104I	TTCGAA	2 cut(s)	122, 179
BspTI	CTTAAG	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	91, 342
BssMI	GATC	4 cut(s)	187, 220, 252, 355
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	3 cut(s)	181, 250, 295
BstAFI	CTTAAG	1 cut(s)	488
BstBI	TTCGAA	2 cut(s)	122, 179
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	25, 41
BstF5I	GGATG	3 cut(s)	62, 153, 466
BstKTI	GATC	4 cut(s)	190, 223, 255, 358
BstMBI	GATC	4 cut(s)	187, 220, 252, 355
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	312, 334
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	62, 153, 466
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	331
CviAII	CATG	2 cut(s)	228, 476
CviJI	RGCY	9 cut(s)	29, 99, 211, 232, 347, 366, 392, 464, 509
CviKI_1	RGCY	9 cut(s)	29, 99, 211, 232, 347, 366, 392, 464, 509
DdeI	CTNAG	2 cut(s)	25, 41
DpnI	GATC	4 cut(s)	189, 222, 254, 357
DpnII	GATC	4 cut(s)	187, 220, 252, 355
Eam1104I	CTCTTC	3 cut(s)	181, 250, 295
EarI	CTCTTC	3 cut(s)	181, 250, 295
Eco47I	GGWCC	1 cut(s)	331
FaeI	CATG	2 cut(s)	231, 479
FaiI	YATR	6 cut(s)	7, 103, 229, 423, 458, 477
FatI	CATG	2 cut(s)	227, 475
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	326, 348
FokI	GGATG	3 cut(s)	49, 140, 453
Fsp4HI	GCNGC	2 cut(s)	326, 348
GluI	GCNGC	2 cut(s)	326, 348
HapII	CCGG	3 cut(s)	91, 303, 329
Hin1II	CATG	2 cut(s)	231, 479
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	181, 338
HpaI	GTTAAC	1 cut(s)	526
HpaII	CCGG	3 cut(s)	91, 303, 329
HphI	GGTGA	2 cut(s)	40, 398
Hpy166II	GTNNAC	3 cut(s)	238, 481, 526
Hpy188I	TCNGA	3 cut(s)	225, 343, 401
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	3 cut(s)	238, 481, 526
HpyAV	CCTTC	2 cut(s)	40, 494
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	25, 41
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	231, 479
Ksp22I	TGATCA	1 cut(s)	355
KspAI	GTTAAC	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	187, 220, 252, 355
LpnPI	CCDG	9 cut(s)	104, 140, 218, 279, 316, 342, 348, 429, 446
Lsp1109I	GCAGC	2 cut(s)	312, 334
LweI	GCATC	1 cut(s)	54
MaeII	ACGT	1 cut(s)	18
MalI	GATC	4 cut(s)	189, 222, 254, 357
MboI	GATC	4 cut(s)	187, 220, 252, 355
MboII	GAAGA	3 cut(s)	168, 237, 282
MflI	RGATCY	1 cut(s)	252
MluCI	AATT	1 cut(s)	412
MseI	TTAA	4 cut(s)	411, 489, 525, 532
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	3 cut(s)	91, 303, 329
MspR9I	CCNGG	1 cut(s)	92
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	187, 220, 252, 355
NlaIII	CATG	2 cut(s)	231, 479
NlaIV	GGNNCC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	479
NspV	TTCGAA	2 cut(s)	122, 179
PciI	ACATGT	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	181, 338
PkrI	GCNGC	2 cut(s)	327, 349
PscI	ACATGT	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	411, 489, 525, 532
SatI	GCNGC	2 cut(s)	326, 348
Sau3AI	GATC	4 cut(s)	187, 220, 252, 355
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	8 cut(s)	21, 42, 134, 213, 245, 290, 368, 486
SfaNI	GCATC	1 cut(s)	54
SfuI	TTCGAA	2 cut(s)	122, 179
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	33, 122, 179
TasI	AATT	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	181, 338
Tru1I	TTAA	4 cut(s)	411, 489, 525, 532
Tru9I	TTAA	4 cut(s)	411, 489, 525, 532
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	2 cut(s)	325, 347
TspRI	CASTG	1 cut(s)	327
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.