Rorug02G0503600

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
63550688 .. 63552913
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0503600.1

Sequence Viewer

Length: 705 bp
ATGGAGTTGAAAAACATACTTGAAGATCAAATGGCTACTCCTTTGTGGTTCTTCAGATTCCCACCACCATTGATTGTGGTTCTTGCTCCATTGCTTATATTGGTGGGTTTGATACTGGGCTTTGGTTTCTACTCCATCTTCCTAACATCTATAGCATTGATATTCTCAACTCTTTTCTTCACATGTTCCAAGCAAAAACCTGTTCTGCTTGAGAGATTAGTTGAAGAAAAAGTTGTTCTTAAGTCTGATAATGAAAGTGCTTCTATACAAGACAAGGAAGTTCAAGAAGCAAGTATGAACAATGAGGCTCCCAAATACTTAGTAGCGCCACAAAGTTCAACACCAGATTTGGTAGCAGAAAGTGCATGCCTTGATGACTTATCAACTAGTGAGGAGTCTGAAGTACTAGACTGGCCATTTGGAGACAATGTGGATCGGAGTCCAGATTGCTCAGACGGTTCAATCTCTGACGAGGAAAGCCTCATCGAAATATCCCTCCCTGACGGATATTATGTTGGCCATGACAAGGAAGAAGAGTCCATCTTTAGTCTGCAACAGAAAATGTCAGGTTTGTCACAGAAGGCCATTTTCCAACAGCATACTCTATTTGAGTTCTTAGCTGAGATCAATGAGGAAGAAAATATGATTGAAATTGACATATCCATGGGCTCAATCAAGTGTTCAAGGTTTGAGATTGAAGCTTGA

Protein Analysis

234

Amino Acids

26.25

Weight (kDa)

4.14

Isoelectric Point (pI)

64.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 441
AcoI YGGCCR 2 cut(s) 413, 517
AcuI CTGAAG 2 cut(s) 37, 420
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 526
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 9 cut(s) 10, 23, 224, 284, 339, 462, 650, 684, 698
AhlI ACTAGT 1 cut(s) 386
AluBI AGCT 2 cut(s) 620, 701
AluI AGCT 2 cut(s) 620, 701
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 441
AoxI GGCC 3 cut(s) 413, 517, 582
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspLEI GCGC 1 cut(s) 328
BalI TGGCCA 2 cut(s) 415, 519
BanII GRGCYC 1 cut(s) 671
BccI CCATC 2 cut(s) 143, 548
BcoDI GTCTC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 2 cut(s) 387, 407
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 239
BmcAI AGTACT 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 309
BmrI ACTGGG 1 cut(s) 125
BmuI ACTGGG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 663
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse1I ACTGG 2 cut(s) 120, 416
Bse3DI GCAATG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 663
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 2 cut(s) 465, 612
BseNI ACTGG 2 cut(s) 120, 416
BseRI GAGGAG 1 cut(s) 407
BshFI GGCC 3 cut(s) 415, 519, 584
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 3 cut(s) 415, 519, 584
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 3 cut(s) 25, 433, 624
Bsp19I CCATGG 1 cut(s) 663
BspANI GGCC 3 cut(s) 415, 519, 584
BspCNI CTCAG 2 cut(s) 464, 613
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 441
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 89
BsrI ACTGG 2 cut(s) 120, 416
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 3 cut(s) 25, 433, 624
BssT1I CCWWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 528
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 4 cut(s) 319, 451, 616, 621
BstDSI CCRYGG 1 cut(s) 663
BstH2I RGCGCY 1 cut(s) 329
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 3 cut(s) 28, 436, 627
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 3 cut(s) 25, 433, 624
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 2 cut(s) 186, 369
BstSFI CTRYAG 1 cut(s) 150
BsuRI GGCC 3 cut(s) 415, 519, 584
BtgI CCRYGG 1 cut(s) 663
Cac8I GCNNGC 1 cut(s) 367
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 404
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 4 cut(s) 183, 366, 521, 664
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 4 cut(s) 319, 451, 616, 621
DpnI GATC 3 cut(s) 27, 435, 626
DpnII GATC 3 cut(s) 25, 433, 624
EaeI YGGCCR 2 cut(s) 413, 517
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 671
Eco57I CTGAAG 2 cut(s) 37, 420
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 671
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 4 cut(s) 186, 369, 524, 667
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 4 cut(s) 182, 365, 520, 663
FriOI GRGCYC 1 cut(s) 671
FspBI CTAG 2 cut(s) 387, 407
GlaI GCGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 329
HaeIII GGCC 3 cut(s) 415, 519, 584
HhaI GCGC 1 cut(s) 328
Hin1II CATG 4 cut(s) 186, 369, 524, 667
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 4 cut(s) 57, 395, 439, 536
Hpy188I TCNGA 6 cut(s) 56, 247, 400, 438, 454, 469
Hpy188III TCNNGA 2 cut(s) 284, 443
HpyAV CCTTC 1 cut(s) 574
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4V TGCA 2 cut(s) 365, 553
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 4 cut(s) 319, 451, 616, 621
Hsp92II CATG 4 cut(s) 186, 369, 524, 667
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 3 cut(s) 25, 433, 624
LmnI GCTCC 2 cut(s) 91, 313
LpnPI CCDG 7 cut(s) 101, 213, 357, 397, 456, 513, 552
MaeI CTAG 2 cut(s) 387, 407
MaeIII GTNAC 1 cut(s) 573
MalI GATC 3 cut(s) 27, 435, 626
MboI GATC 3 cut(s) 25, 433, 624
MboII GAAGA 8 cut(s) 35, 43, 130, 169, 236, 542, 545, 647
MhlI GDGCHC 1 cut(s) 671
MlsI TGGCCA 2 cut(s) 415, 519
MluCI AATT 1 cut(s) 651
MluNI TGGCCA 2 cut(s) 415, 519
MlyI GAGTC 3 cut(s) 404, 448, 545
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 6 cut(s) 298, 385, 466, 491, 506, 625
Mox20I TGGCCA 2 cut(s) 415, 519
MscI TGGCCA 2 cut(s) 415, 519
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 2 cut(s) 415, 519
MspCI CTTAAG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 362
NcoI CCATGG 1 cut(s) 663
NdeII GATC 3 cut(s) 25, 433, 624
NlaIII CATG 4 cut(s) 186, 369, 524, 667
NlaIV GGNNCC 1 cut(s) 309
NmuCI GTSAC 1 cut(s) 573
NspI RCATGY 2 cut(s) 186, 369
PaeI GCATGC 1 cut(s) 369
PciI ACATGT 1 cut(s) 182
PfeI GAWTC 1 cut(s) 57
PleI GAGTC 3 cut(s) 403, 447, 544
PpsI GAGTC 3 cut(s) 403, 447, 544
PscI ACATGT 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 309
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 3 cut(s) 25, 433, 624
ScaI AGTACT 1 cut(s) 405
SchI GAGTC 3 cut(s) 404, 448, 545
SduI GDGCHC 1 cut(s) 671
SetI ASST 5 cut(s) 202, 571, 622, 689, 703
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 209, 239
SmoI CTYRAG 2 cut(s) 209, 239
SpeI ACTAGT 1 cut(s) 386
SphI GCATGC 1 cut(s) 369
Sse9I AATT 1 cut(s) 651
SspMI CTAG 2 cut(s) 387, 407
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 486
TasI AATT 1 cut(s) 651
TatI WGTACW 1 cut(s) 403
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 1 cut(s) 573
Tsp45I GTSAC 1 cut(s) 573
TspDTI ATGAA 2 cut(s) 267, 311
TspGWI ACGGA 1 cut(s) 519
Vha464I CTTAAG 1 cut(s) 239
XceI RCATGY 2 cut(s) 186, 369
XspI CTAG 2 cut(s) 387, 407
ZrmI AGTACT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.