Rorug03G0247200

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
23180193 .. 23182207
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0247200.1

Sequence Viewer

Length: 948 bp
ATGGATATGGACATACTGAGTTGGAATTGCAGAGGAATCTGCAACGACATCACAATTCGGGCGTTGAAGGATTTGATATCCCAAAACAGACCCCAAATTATTTTTCTTTGCGAAACCAAAATCAACAATATCAGGGCCTTTAACGATCTGCGTTTGGCGCTTGGTTTTTCTCAGGCTCAGGAAGTGTTGAGTGTAGGACAGTCTGGTGGTTTGGGCATGTTCTGGAATGATGATGTGAAGGTGGAGGTGGGTACGACGTCACAACATCATATTGATATTATGGTTGATGGAGGACCTGGAACCCCTAGGTGGAGACTTACAGGTTTTTATGGATTTGCTCGAACGGTGGATAGAGACAAATCATGGCAGCTTTTGCGTGATTTGAGTGATTTGGAGACCCTTCCCTGGGTCGTTATCGGGGATTTTAATGAAATCCTAAATAGTAGTGAGAAGAAAGATGGTCCGATTAGGGCAGAGAGGCAGATGCGTGGTTTTAGAGAAGCCCTAGGGTATGGGGATTTGCTTGATCTTGGTTTTCAGGGGCCTCAGGCAACTTGGTGGAATTCTGAAACCCAGTTACGGTTGGACAGGGCTGTGTGTACACCGACTTGGTGTGATATTTTTGGTTTTGCACGTCTGAAGCATCTCCCACCAAGTGATTCCGATCATGTGCCAATACTGCTACAAGCTAGTACTGTTCCTCTTCCCACACGTCCTCGTCATCATCGCTTCAAATTTGAAGCACATTGGTTGCAACATGAAGAATGTGATGGCGTTGTACACCAAGCCTGGCAGACAGATGTGTCCGGTTTGCCAATGTATCAATTGTCCAAGAAGATAGCTTATACTAGAATGCATCTGGATGCTTGGCAGAGGAAGACGTTCAAGGGTAGACAAATGGAAATCACAGTGCCTCGCCACTTTGACAGCTTCGGGGTTCGAACCTAG

Protein Analysis

315

Amino Acids

36.22

Weight (kDa)

6.83

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 217 4e-20 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 802
AatII GACGTC 1 cut(s) 260
AccI GTMKAC 1 cut(s) 892
AcsI RAATTY 2 cut(s) 562, 734
AcuI CTGAAG 1 cut(s) 659
AcyI GRCGYC 1 cut(s) 257
AdeI CACNNNGTG 1 cut(s) 656
AfaI GTAC 4 cut(s) 253, 601, 694, 780
AfiI CCNNNNNNNGG 4 cut(s) 309, 405, 406, 579
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 4 cut(s) 67, 733, 740, 886
AjiI CACGTC 2 cut(s) 635, 713
AjnI CCWGG 3 cut(s) 295, 404, 788
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 4 cut(s) 370, 689, 842, 930
AluI AGCT 4 cut(s) 370, 689, 842, 930
Alw26I GTCTC 3 cut(s) 307, 348, 389
AoxI GGCC 2 cut(s) 135, 542
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 562, 734
Asp700I GAANNNNTTC 1 cut(s) 881
AspA2I CCTAGG 2 cut(s) 305, 505
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 4 cut(s) 135, 293, 461, 542
AsuII TTCGAA 1 cut(s) 940
AvaII GGWCC 2 cut(s) 293, 461
AvrII CCTAGG 2 cut(s) 305, 505
AxyI CCTNAGG 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 884
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 281, 452, 764
BciT130I CCWGG 3 cut(s) 297, 406, 790
BcoDI GTCTC 3 cut(s) 307, 348, 389
BfaI CTAG 5 cut(s) 306, 506, 690, 849, 946
BfoI RGCGCY 1 cut(s) 161
BisI GCNGC 1 cut(s) 368
BlnI CCTAGG 2 cut(s) 305, 505
BlsI GCNGC 1 cut(s) 369
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 3 cut(s) 297, 406, 790
Bme18I GGWCC 2 cut(s) 293, 461
BmgBI CACGTC 2 cut(s) 635, 713
BmgT120I GGNCC 4 cut(s) 135, 293, 461, 542
BmiI GGNNCC 2 cut(s) 301, 543
BmrFI CCNGG 3 cut(s) 297, 406, 790
BmrI ACTGGG 1 cut(s) 568
BmsI GCATC 4 cut(s) 474, 652, 853, 865
BmuI ACTGGG 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 884
Bpu10I CCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 940
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 305, 404, 405, 505
BsaWI WCCGGW 1 cut(s) 806
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 405, 406, 579
Bse1I ACTGG 1 cut(s) 574
Bse21I CCTNAGG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 3 cut(s) 297, 406, 790
BseDI CCNNGG 4 cut(s) 305, 404, 405, 505
BseGI GGATG 1 cut(s) 868
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 4 cut(s) 309, 405, 406, 579
BseMII CTCAG 4 cut(s) 8, 185, 191, 560
BseNI ACTGG 1 cut(s) 574
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 137, 544
BsiSI CCGG 1 cut(s) 807
BslI CCNNNNNNNGG 4 cut(s) 309, 405, 406, 579
BsmAI GTCTC 3 cut(s) 307, 348, 389
BsmI GAATGC 1 cut(s) 858
BsnI GGCC 2 cut(s) 137, 544
Bso31I GGTCTC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 940
Bsp1407I TGTACA 2 cut(s) 599, 778
Bsp143I GATC 3 cut(s) 145, 526, 664
BspANI GGCC 2 cut(s) 137, 544
BspCNI CTCAG 4 cut(s) 9, 184, 190, 559
BspLI GGNNCC 2 cut(s) 301, 543
BspT104I TTCGAA 1 cut(s) 940
BspTNI GGTCTC 1 cut(s) 389
BsrGI TGTACA 2 cut(s) 599, 778
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 4 cut(s) 305, 404, 405, 505
BssMI GATC 3 cut(s) 145, 526, 664
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 305, 505
Bst2UI CCWGG 3 cut(s) 297, 406, 790
Bst4CI ACNGT 5 cut(s) 201, 346, 582, 697, 910
Bst6I CTCTTC 1 cut(s) 708
BstACI GRCGYC 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 373
BstAUI TGTACA 2 cut(s) 599, 778
BstBI TTCGAA 1 cut(s) 940
BstDEI CTNAG 4 cut(s) 17, 171, 177, 546
BstF5I GGATG 1 cut(s) 868
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 148, 529, 667
BstMAI GTCTC 3 cut(s) 307, 348, 389
BstMBI GATC 3 cut(s) 145, 526, 664
BstMWI GCNNNNNNNGC 3 cut(s) 157, 373, 679
BstNI CCWGG 3 cut(s) 297, 406, 790
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 295, 404, 788
BstV1I GCAGC 1 cut(s) 379
BstV2I GAAGAC 1 cut(s) 884
Bsu36I CCTNAGG 1 cut(s) 546
BsuRI GGCC 2 cut(s) 137, 544
BtgZI GCGATG 1 cut(s) 710
BtrI CACGTC 2 cut(s) 635, 713
BtsCI GGATG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 915
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 4 cut(s) 135, 293, 461, 542
Csp6I GTAC 4 cut(s) 252, 600, 693, 779
CviAII CATG 4 cut(s) 217, 363, 668, 758
CviQI GTAC 4 cut(s) 252, 600, 693, 779
DdeI CTNAG 4 cut(s) 17, 171, 177, 546
DpnI GATC 3 cut(s) 147, 528, 666
DpnII GATC 3 cut(s) 145, 526, 664
DraIII CACNNNGTG 1 cut(s) 656
DrdI GACNNNNNNGTC 1 cut(s) 802
DseDI GACNNNNNNGTC 1 cut(s) 802
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco130I CCWWGG 2 cut(s) 305, 505
Eco31I GGTCTC 1 cut(s) 389
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 293, 461
Eco57I CTGAAG 1 cut(s) 659
Eco81I CCTNAGG 1 cut(s) 546
EcoO109I RGGNCCY 3 cut(s) 135, 293, 542
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 3 cut(s) 295, 404, 788
EcoRV GATATC 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 305, 505
EcoT22I ATGCAT 1 cut(s) 858
ErhI CCWWGG 2 cut(s) 305, 505
FaeI CATG 4 cut(s) 220, 366, 671, 761
FatI CATG 4 cut(s) 216, 362, 667, 757
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 875
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 5 cut(s) 306, 506, 690, 849, 946
GlaI GCGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 2 cut(s) 137, 544
HapII CCGG 1 cut(s) 807
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 4 cut(s) 220, 366, 671, 761
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 36, 659
HpaII CCGG 1 cut(s) 807
Hpy166II GTNNAC 4 cut(s) 600, 602, 781, 893
Hpy188I TCNGA 4 cut(s) 465, 568, 639, 664
Hpy188III TCNNGA 3 cut(s) 179, 223, 860
Hpy8I GTNNAC 4 cut(s) 600, 602, 781, 893
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 61, 232, 410
HpyCH4III ACNGT 5 cut(s) 201, 346, 582, 697, 910
HpyCH4IV ACGT 4 cut(s) 257, 634, 712, 881
HpyCH4V TGCA 5 cut(s) 30, 42, 632, 754, 856
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 373, 679
HpyF3I CTNAG 4 cut(s) 17, 171, 177, 546
HpySE526I ACGT 4 cut(s) 257, 634, 712, 881
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 4 cut(s) 220, 366, 671, 761
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 3 cut(s) 145, 526, 664
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 4 cut(s) 474, 652, 853, 865
MaeI CTAG 5 cut(s) 306, 506, 690, 849, 946
MaeII ACGT 4 cut(s) 257, 634, 712, 881
MaeIII GTNAC 2 cut(s) 258, 576
MalI GATC 3 cut(s) 147, 528, 666
MboI GATC 3 cut(s) 145, 526, 664
MboII GAAGA 5 cut(s) 463, 695, 773, 847, 889
MfeI CAATTG 1 cut(s) 824
MluCI AATT 6 cut(s) 25, 54, 96, 562, 734, 824
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 9 cut(s) 26, 238, 284, 471, 555, 711, 726, 867, 924
Mph1103I ATGCAT 1 cut(s) 858
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 2 cut(s) 141, 426
MslI CAYNNNNRTG 1 cut(s) 861
MspI CCGG 1 cut(s) 807
MspR9I CCNGG 3 cut(s) 297, 406, 790
MunI CAATTG 1 cut(s) 824
Mva1269I GAATGC 1 cut(s) 858
MvaI CCWGG 3 cut(s) 297, 406, 790
MwoI GCNNNNNNNGC 3 cut(s) 157, 373, 679
NdeII GATC 3 cut(s) 145, 526, 664
NlaIII CATG 4 cut(s) 220, 366, 671, 761
NlaIV GGNNCC 2 cut(s) 301, 543
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 858
NspI RCATGY 1 cut(s) 220
NspV TTCGAA 1 cut(s) 940
PasI CCCWGGG 1 cut(s) 405
PctI GAATGC 1 cut(s) 858
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 2 cut(s) 36, 659
PkrI GCNGC 1 cut(s) 369
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 295, 404, 788
PspGI CCWGG 3 cut(s) 295, 404, 788
PspN4I GGNNCC 2 cut(s) 301, 543
PspPI GGNCC 4 cut(s) 135, 293, 461, 542
PspPPI RGGWCCY 1 cut(s) 293
RsaI GTAC 4 cut(s) 253, 601, 694, 780
RsaNI GTAC 4 cut(s) 252, 600, 693, 779
RseI CAYNNNNRTG 1 cut(s) 861
SaqAI TTAA 2 cut(s) 141, 426
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 3 cut(s) 145, 526, 664
Sau96I GGNCC 4 cut(s) 135, 293, 461, 542
ScaI AGTACT 1 cut(s) 694
ScrFI CCNGG 3 cut(s) 297, 406, 790
SfaNI GCATC 4 cut(s) 474, 652, 853, 865
SfuI TTCGAA 1 cut(s) 940
SinI GGWCC 2 cut(s) 293, 461
SmiMI CAYNNNNRTG 1 cut(s) 861
Sse9I AATT 6 cut(s) 25, 54, 96, 562, 734, 824
SspMI CTAG 5 cut(s) 306, 506, 690, 849, 946
StyD4I CCNGG 3 cut(s) 295, 404, 788
StyI CCWWGG 2 cut(s) 305, 505
TaaI ACNGT 5 cut(s) 201, 346, 582, 697, 910
TaiI ACGT 4 cut(s) 260, 637, 715, 884
TaqI TCGA 2 cut(s) 340, 940
TasI AATT 6 cut(s) 25, 54, 96, 562, 734, 824
TatI WGTACW 3 cut(s) 599, 692, 778
TfiI GAWTC 2 cut(s) 36, 659
Tru1I TTAA 2 cut(s) 141, 426
Tru9I TTAA 2 cut(s) 141, 426
TscAI CASTG 1 cut(s) 915
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 444, 774
TspRI CASTG 1 cut(s) 915
VpaK11BI GGWCC 2 cut(s) 293, 461
XapI RAATTY 2 cut(s) 562, 734
XceI RCATGY 1 cut(s) 220
XmaJI CCTAGG 2 cut(s) 305, 505
XmiI GTMKAC 1 cut(s) 892
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 5 cut(s) 306, 506, 690, 849, 946
ZraI GACGTC 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 694
Zsp2I ATGCAT 1 cut(s) 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.