Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019504.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

11258 .. 12155

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019504.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atggtgtcaccctcgacttcccttcctccaatctcacattcattcttgtccggggaagcccatatctcacatactctgtttcgaaccagacctcaatatcattctcaaccacccacgccattctatctctctcttcgagccaagatcacaccaagcacaccatccagctcagtaacgatcagacatggcattgtgagggttgccgtgctgccggacccagaatctgaggctcgatctcgctaccctgtttcgggtgaggctgtgtccagagatgggtttaatttggagtataagtgggaagcaaaagggaacattgatggtgagcttgttggtgttgtaggggactcgtgggtgctgaggccagagcctgtttcggttacttgccattcgattaagggtgttaaggaagaatcgaaaagtgagatcatggctgcattgtgccaagatgtggaggggaagttggttgccagggcggcgaggctggctttgattgctgaggaggtgggttatgttgatgtgattctggcgattgagaagtacttgagggatgcaattgagccatggttttggatgggacttttggtgggaatggatgtcgggtttggagtttacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

205

Amino Acids

22.52

Weight (kDa)

5.87

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	448
AciI	CCGC	1 cut(s)	473
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	4 cut(s)	250, 251, 273, 448
AjnI	CCWGG	1 cut(s)	467
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	2 cut(s)	168, 325
AluI	AGCT	2 cut(s)	168, 325
AlwNI	CAGNNNCTG	2 cut(s)	224, 368
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	208, 431
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	266, 332
AsuII	TTCGAA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	346
BbvCI	CCTCAGC	2 cut(s)	356, 495
BbvI	GCAGC	2 cut(s)	195, 418
BccI	CCATC	4 cut(s)	169, 266, 311, 565
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	52
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	3 cut(s)	209, 432, 474
BlsI	GCNGC	3 cut(s)	210, 433, 475
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	2 cut(s)	52, 469
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	52, 469
BmsI	GCATC	1 cut(s)	538
Bpu10I	CCTNAGC	2 cut(s)	356, 495
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	51, 468, 560
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 308, 443, 473
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 251, 273, 448
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	3 cut(s)	51, 468, 560
BseGI	GGATG	4 cut(s)	161, 553, 576, 598
BseLI	CCNNNNNNNGG	4 cut(s)	250, 251, 273, 448
BseMII	CTCAG	4 cut(s)	183, 216, 347, 486
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	195, 418
BshFI	GGCC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	51, 212
BslFI	GGGAC	2 cut(s)	356, 588
BslI	CCNNNNNNNGG	4 cut(s)	250, 251, 273, 448
BsmFI	GGGAC	2 cut(s)	356, 588
BsnI	GGCC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	144, 177, 233, 423
Bsp19I	CCATGG	1 cut(s)	560
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	4 cut(s)	182, 217, 348, 487
BspLI	GGNNCC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	82
BssECI	CCNNGG	3 cut(s)	51, 468, 560
BssMI	GATC	4 cut(s)	144, 177, 233, 423
BssSI	CACGAG	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	560
Bst2BI	CACGAG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	138
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	4 cut(s)	169, 225, 356, 495
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	4 cut(s)	161, 553, 576, 598
BstKTI	GATC	4 cut(s)	147, 180, 236, 426
BstMBI	GATC	4 cut(s)	144, 177, 233, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 482, 491
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	50, 467
BstV1I	GCAGC	2 cut(s)	195, 418
BstXI	CCANNNNNNTGG	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	4 cut(s)	161, 553, 576, 598
Cac8I	GCNNGC	1 cut(s)	483
CaiI	CAGNNNCTG	2 cut(s)	224, 368
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	3 cut(s)	185, 427, 561
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	4 cut(s)	169, 225, 356, 495
DpnI	GATC	4 cut(s)	146, 179, 235, 425
DpnII	GATC	4 cut(s)	144, 177, 233, 423
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	467
EcoT14I	CCWWGG	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	3 cut(s)	188, 430, 564
FaiI	YATR	7 cut(s)	63, 72, 186, 291, 428, 510, 562
FaqI	GGGAC	2 cut(s)	356, 588
FatI	CATG	3 cut(s)	184, 426, 560
Fnu4HI	GCNGC	3 cut(s)	209, 432, 474
FokI	GGATG	4 cut(s)	148, 560, 583, 605
Fsp4HI	GCNGC	3 cut(s)	209, 432, 474
GluI	GCNGC	3 cut(s)	209, 432, 474
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	2 cut(s)	51, 212
Hin1II	CATG	3 cut(s)	188, 430, 564
HinfI	GANTC	4 cut(s)	221, 344, 410, 520
HpaII	CCGG	2 cut(s)	51, 212
HphI	GGTGA	2 cut(s)	266, 332
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	182, 226
Hpy188III	TCNNGA	1 cut(s)	267
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	434, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 482, 491
HpyF3I	CTNAG	4 cut(s)	169, 225, 356, 495
Hsp92II	CATG	3 cut(s)	188, 430, 564
Kzo9I	GATC	4 cut(s)	144, 177, 233, 423
Lsp1109I	GCAGC	2 cut(s)	195, 418
LweI	GCATC	1 cut(s)	538
MaeIII	GTNAC	3 cut(s)	6, 172, 376
MalI	GATC	4 cut(s)	146, 179, 235, 425
MboI	GATC	4 cut(s)	144, 177, 233, 423
MboII	GAAGA	2 cut(s)	125, 419
MfeI	CAATTG	2 cut(s)	552, 613
MluCI	AATT	3 cut(s)	280, 552, 613
MlyI	GAGTC	1 cut(s)	338
MseI	TTAA	3 cut(s)	279, 393, 402
MspI	CCGG	2 cut(s)	51, 212
MspR9I	CCNGG	2 cut(s)	52, 469
MunI	CAATTG	2 cut(s)	552, 613
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	3 cut(s)	473, 482, 491
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	560
NdeII	GATC	4 cut(s)	144, 177, 233, 423
NlaIII	CATG	3 cut(s)	188, 430, 564
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	82
PfeI	GAWTC	3 cut(s)	221, 410, 520
PflMI	CCANNNNNTGG	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	210, 433, 475
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	2 cut(s)	224, 368
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	3 cut(s)	279, 393, 402
SatI	GCNGC	3 cut(s)	209, 432, 474
Sau3AI	GATC	4 cut(s)	144, 177, 233, 423
Sau96I	GGNCC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	52, 469
SetI	ASST	4 cut(s)	94, 170, 327, 504
SfaNI	GCATC	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	3 cut(s)	280, 552, 613
SsiI	CCGC	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	50, 467
StyI	CCWWGG	1 cut(s)	560
TaqI	TCGA	6 cut(s)	14, 82, 136, 232, 389, 413
TasI	AATT	3 cut(s)	280, 552, 613
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	221, 410, 520
Tru1I	TTAA	3 cut(s)	279, 393, 402
Tru9I	TTAA	3 cut(s)	279, 393, 402
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	2 cut(s)	208, 431
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.