Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

10604053 .. 10604607

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCAACTGAGCCATGGTTGGATGGAACTTTTGATTGACGCAGAATCGGGGATGAAGTATAAGCCTCAAGCTTATTCACTTGCCGCGGATTTTATGAACTTAGAGATTAGGTCAGATTCGAATTATCCAAGGCTGAGGGGCTTTGATTTGTATAAACTGCATTCGTGGGCAGGAGGGGTGACTGAATTTGGAGATGGCCGGAATCAAGAGAGCACTAGCGAGGCGGTGAATGCTTACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCATGTGGCCACAGGGTCAATGATAGCAGCATTGGAAATCCAGGCAGTTCAAATGTGGTGGCATGTAAGAGAGGAAGACAACATTTATGCACCACATTACACAAAGGAAAATCGTTTGGTTGGAGTACTATGGGCTAATAAGAGAGACAGTGTTCTTCGGTTTGCTCCTGCGGAGTGGAGAGAGTGCCTGCTTGGAATCCAGCTACTGCCCATTGTACCTATTACTGAGAAATTGTTCCCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

184

Amino Acids

20.96

Weight (kDa)

5.21

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	12 - 180	4.6e-47	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AciI	CCGC	4 cut(s)	84, 86, 224, 449
AcoI	YGGCCR	2 cut(s)	196, 285
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	3 cut(s)	405, 495, 551
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	71, 245, 481
AluI	AGCT	3 cut(s)	71, 245, 481
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	264, 417
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	2 cut(s)	196, 285
ApeKI	GCWGC	2 cut(s)	245, 305
ApoI	RAATTY	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	190, 238
AsuII	TTCGAA	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	215
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	232, 317
BccI	CCATC	2 cut(s)	16, 188
BciT130I	CCWGG	1 cut(s)	320
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	264, 417
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	84, 246, 306
BlsI	GCNGC	3 cut(s)	85, 247, 307
BmcAI	AGTACT	2 cut(s)	405, 551
Bme1390I	CCNGG	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	13, 84, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	13, 84, 128
BseGI	GGATG	2 cut(s)	27, 57
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMII	CTCAG	3 cut(s)	125, 255, 495
BseXI	GCAGC	2 cut(s)	232, 317
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	198, 287
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	264, 417
BsmI	GAATGC	2 cut(s)	160, 235
BsnI	GGCC	2 cut(s)	198, 287
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	4 cut(s)	84, 86, 224, 449
BspANI	GGCC	2 cut(s)	198, 287
BspCNI	CTCAG	3 cut(s)	126, 254, 496
BspFNI	CGCG	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	13, 84, 128
BssMI	GATC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	13, 128
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	428
BstBI	TTCGAA	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	5 cut(s)	8, 100, 134, 241, 504
BstDSI	CCRYGG	2 cut(s)	13, 84
BstF5I	GGATG	2 cut(s)	27, 57
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	264, 417
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	318
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	232, 317
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	198, 287
BtgI	CCRYGG	2 cut(s)	13, 84
BtsCI	GGATG	2 cut(s)	27, 57
BtsIMutI	CAGTG	2 cut(s)	273, 433
Cac8I	GCNNGC	1 cut(s)	467
CaiI	CAGNNNCTG	1 cut(s)	484
Cfr42I	CCGCGG	1 cut(s)	87
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	404, 494, 550
CspCI	CAANNNNNGTGG	2 cut(s)	317, 352
CviAII	CATG	3 cut(s)	14, 281, 341
CviQI	GTAC	3 cut(s)	404, 494, 550
DdeI	CTNAG	5 cut(s)	8, 100, 134, 241, 504
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	196, 285
Eco130I	CCWWGG	2 cut(s)	13, 128
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	13, 128
ErhI	CCWWGG	2 cut(s)	13, 128
FaeI	CATG	3 cut(s)	17, 284, 344
FatI	CATG	3 cut(s)	13, 280, 340
FauNDI	CATATG	1 cut(s)	265
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	84, 246, 306
FokI	GGATG	2 cut(s)	34, 64
Fsp4HI	GCNGC	3 cut(s)	84, 246, 306
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	3 cut(s)	84, 246, 306
HaeIII	GGCC	2 cut(s)	198, 287
HapII	CCGG	1 cut(s)	199
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	17, 284, 344
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	4 cut(s)	44, 116, 202, 474
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	2 cut(s)	190, 238
Hpy188I	TCNGA	1 cut(s)	115
Hpy188III	TCNNGA	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4V	TGCA	4 cut(s)	4, 160, 248, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	5 cut(s)	8, 100, 134, 241, 504
Hsp92II	CATG	3 cut(s)	17, 284, 344
Ksp22I	TGATCA	1 cut(s)	277
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	9 cut(s)	156, 212, 276, 305, 332, 459, 479, 491, 531
Lsp1109I	GCAGC	2 cut(s)	232, 317
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	365, 425
MhlI	GDGCHC	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	3 cut(s)	121, 185, 509
MluNI	TGGCCA	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	5 cut(s)	75, 129, 167, 214, 343
Mox20I	TGGCCA	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	86, 245
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	2 cut(s)	160, 235
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	3 cut(s)	17, 284, 344
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	1 cut(s)	344
NspV	TTCGAA	1 cut(s)	119
PctI	GAATGC	2 cut(s)	160, 235
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	4 cut(s)	44, 116, 202, 474
PkrI	GCNGC	3 cut(s)	85, 247, 307
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	3 cut(s)	405, 495, 551
RsaNI	GTAC	3 cut(s)	404, 494, 550
SacII	CCGCGG	1 cut(s)	87
SatI	GCNGC	3 cut(s)	84, 246, 306
Sau3AI	GATC	1 cut(s)	277
ScaI	AGTACT	2 cut(s)	405, 551
ScrFI	CCNGG	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	5 cut(s)	73, 113, 247, 483, 499
Sfr303I	CCGCGG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	3 cut(s)	121, 185, 509
SsiI	CCGC	4 cut(s)	84, 86, 224, 449
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	2 cut(s)	13, 128
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	121, 185, 509
TatI	WGTACW	2 cut(s)	403, 549
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	4 cut(s)	44, 116, 202, 474
TscAI	CASTG	2 cut(s)	280, 433
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	2 cut(s)	245, 305
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	68, 110
TspRI	CASTG	2 cut(s)	280, 433
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	1 cut(s)	216
ZrmI	AGTACT	2 cut(s)	405, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.