Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

82553084 .. 82553758

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG595200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAAGTTTAAGGATCAAGCTTATGCTCTTGCTGGGGATTTCATGAACTTAAACAGGCAGCCAGATTCAAGTTACCCGCGGTTGAGGAACTTCGATCTCTACAATTTGCATTCGTGGGCCGGAGGGTTAACTGAATTTGCAGATGGACGAAATCAAGAGAGTACAAGTGAGGCAGTGAATGCTTATTACTCGGCTGCATTGATGGGGTTAGCCTATAGAGACACTAATCTCACTGACACAGCATCATTGCTTGCAGCACTGGAGATTCAGGCAGCTCAAAAGTGGTGGCATGTGCACCAAGGAGATAACATCTATGATGATGTCTTCGCGAGTCAGAATAAGATCACTGGAATTGTGTGGTCTAATAAGAGGGATACCGGTCTTTGGTTTGCTTCAGCAGAGTCGAAAGAAATCAGGCTTGGAATTCAGGTGCTGCCGATTTCCCCTATCACTGAGGTCTTGTTCTCCAATGCCAGCTATGTTAGGGAGGTTGTAGATTGGACAATACCAGCTCTGAATAGGGAGGGAGTTACCGATGCATGGAGAGGGTTTGCTTATGCCTTGGAAGGGATATACAACAAGGAAGAGGCTTTGCAGAAGGTTAAAAACTTGAAAGGTTTTGATGATGGGAACTCACTTTCGAATCTCTTATGGTGGATCCACAGCAGAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

224

Amino Acids

25.32

Weight (kDa)

5.24

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	3 - 219	2.1e-61	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	79, 329
AciI	CCGC	2 cut(s)	77, 79
AclWI	GGATC	3 cut(s)	21, 652, 665
AcsI	RAATTY	2 cut(s)	134, 423
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	3 cut(s)	384, 540, 567
AgeI	ACCGGT	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	69, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	4 cut(s)	20, 275, 477, 512
AluI	AGCT	4 cut(s)	20, 275, 477, 512
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	3 cut(s)	21, 652, 665
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	117
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	5 cut(s)	58, 194, 254, 272, 433
ApoI	RAATTY	2 cut(s)	134, 423
AsiGI	ACCGGT	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	641
BaeGI	GKGCMC	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	5 cut(s)	70, 181, 266, 284, 420
BccI	CCATC	3 cut(s)	137, 196, 620
BciVI	GTATCC	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	673
BfmI	CTRYAG	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	5 cut(s)	59, 195, 255, 273, 434
BlsI	GCNGC	5 cut(s)	60, 196, 256, 274, 435
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	659
BmsI	GCATC	2 cut(s)	251, 526
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	77, 298, 561
BsaWI	WCCGGW	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	3 cut(s)	384, 540, 567
Bse118I	RCCGGY	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	264, 352
Bse3DI	GCAATG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	77, 298, 561
BseLI	CCNNNNNNNGG	3 cut(s)	384, 540, 567
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	2 cut(s)	264, 352
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	5 cut(s)	70, 181, 266, 284, 420
BseYI	CCCAGC	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	79, 329
BshFI	GGCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	120, 378
BslI	CCNNNNNNNGG	3 cut(s)	384, 540, 567
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	2 cut(s)	109, 184
BsnI	GGCC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	4 cut(s)	13, 94, 342, 657
Bsp68I	TCGCGA	1 cut(s)	329
BspACI	CCGC	2 cut(s)	77, 79
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	79, 329
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	659
BspPI	GGATC	3 cut(s)	21, 652, 665
BspT104I	TTCGAA	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	264, 352
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	3 cut(s)	77, 298, 561
BssMI	GATC	4 cut(s)	13, 94, 342, 657
BssT1I	CCWWGG	2 cut(s)	298, 561
Bst6I	CTCTTC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	252, 475
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	1 cut(s)	77
BstFNI	CGCG	2 cut(s)	79, 329
BstKTI	GATC	4 cut(s)	16, 97, 345, 660
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	4 cut(s)	13, 94, 342, 657
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	2 cut(s)	79, 329
BstV1I	GCAGC	5 cut(s)	70, 181, 266, 284, 420
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	5 cut(s)	180, 231, 257, 345, 450
BtuMI	TCGCGA	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	252, 475
CaiI	CAGNNNCTG	1 cut(s)	433
CciI	TCATGA	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	117
Cfr42I	CCGCGG	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	162
CspAI	ACCGGT	1 cut(s)	377
CspCI	CAANNNNNGTGG	2 cut(s)	266, 301
CviAII	CATG	3 cut(s)	43, 290, 540
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	4 cut(s)	15, 96, 344, 659
DpnII	GATC	4 cut(s)	13, 94, 342, 657
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
Eco130I	CCWWGG	2 cut(s)	298, 561
Eco57I	CTGAAG	1 cut(s)	378
EcoRI	GAATTC	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	298, 561
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	298, 561
FaeI	CATG	3 cut(s)	46, 293, 543
FatI	CATG	3 cut(s)	42, 289, 539
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	59, 195, 255, 273, 434
Fsp4HI	GCNGC	5 cut(s)	59, 195, 255, 273, 434
FspBI	CTAG	1 cut(s)	673
GluI	GCNGC	5 cut(s)	59, 195, 255, 273, 434
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	120, 378
Hin1II	CATG	3 cut(s)	46, 293, 543
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	5 cut(s)	65, 265, 331, 401, 643
HpaI	GTTAAC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	120, 378
Hpy166II	GTNNAC	2 cut(s)	129, 295
Hpy188I	TCNGA	2 cut(s)	336, 516
Hpy188III	TCNNGA	3 cut(s)	43, 155, 328
Hpy8I	GTNNAC	2 cut(s)	129, 295
HpyAV	CCTTC	2 cut(s)	560, 592
HpyCH4V	TGCA	7 cut(s)	109, 140, 197, 254, 295, 539, 595
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	453
Hsp92II	CATG	3 cut(s)	46, 293, 543
KspAI	GTTAAC	1 cut(s)	129
KspI	CCGCGG	1 cut(s)	80
Kzo9I	GATC	4 cut(s)	13, 94, 342, 657
Lsp1109I	GCAGC	5 cut(s)	70, 181, 266, 284, 420
LweI	GCATC	2 cut(s)	251, 526
MaeI	CTAG	1 cut(s)	673
MaeIII	GTNAC	2 cut(s)	71, 529
MalI	GATC	4 cut(s)	15, 96, 344, 659
MboI	GATC	4 cut(s)	13, 94, 342, 657
MboII	GAAGA	2 cut(s)	316, 596
MflI	RGATCY	1 cut(s)	657
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	4 cut(s)	103, 134, 351, 423
MlyI	GAGTC	2 cut(s)	340, 410
Mph1103I	ATGCAT	1 cut(s)	541
MseI	TTAA	4 cut(s)	9, 50, 128, 603
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	2 cut(s)	120, 378
Mva1269I	GAATGC	2 cut(s)	109, 184
MvnI	CGCG	2 cut(s)	79, 329
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeII	GATC	4 cut(s)	13, 94, 342, 657
NlaIII	CATG	3 cut(s)	46, 293, 543
NlaIV	GGNNCC	1 cut(s)	659
NmeAIII	GCCGAG	1 cut(s)	170
NruI	TCGCGA	1 cut(s)	329
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	1 cut(s)	293
NspV	TTCGAA	1 cut(s)	641
PagI	TCATGA	1 cut(s)	42
PctI	GAATGC	2 cut(s)	109, 184
PfeI	GAWTC	3 cut(s)	65, 265, 643
PinAI	ACCGGT	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	60, 196, 256, 274, 435
PleI	GAGTC	2 cut(s)	339, 409
PpsI	GAGTC	2 cut(s)	339, 409
PspFI	CCCAGC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	657
RruI	TCGCGA	1 cut(s)	329
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SacII	CCGCGG	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	9, 50, 128, 603
SatI	GCNGC	5 cut(s)	59, 195, 255, 273, 434
Sau3AI	GATC	4 cut(s)	13, 94, 342, 657
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	2 cut(s)	340, 410
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	9 cut(s)	22, 277, 432, 459, 479, 492, 514, 603, 619
SfaNI	GCATC	2 cut(s)	251, 526
SfcI	CTRYAG	1 cut(s)	214
Sfr303I	CCGCGG	1 cut(s)	80
SfuI	TTCGAA	1 cut(s)	641
SgrBI	CCGCGG	1 cut(s)	80
Sse9I	AATT	4 cut(s)	103, 134, 351, 423
SsiI	CCGC	2 cut(s)	77, 79
SspMI	CTAG	1 cut(s)	673
StyI	CCWWGG	2 cut(s)	298, 561
TaqI	TCGA	3 cut(s)	93, 404, 641
TasI	AATT	4 cut(s)	103, 134, 351, 423
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	3 cut(s)	65, 265, 643
Tru1I	TTAA	4 cut(s)	9, 50, 128, 603
Tru9I	TTAA	4 cut(s)	9, 50, 128, 603
TscAI	CASTG	5 cut(s)	180, 238, 264, 352, 457
TseI	GCWGC	5 cut(s)	58, 194, 254, 272, 433
TspDTI	ATGAA	3 cut(s)	17, 31, 59
TspRI	CASTG	5 cut(s)	180, 238, 264, 352, 457
VneI	GTGCAC	1 cut(s)	293
XapI	RAATTY	2 cut(s)	134, 423
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	1 cut(s)	673
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.