Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019504.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

7441 .. 8064

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019504.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ctgaggtgctttgatttgtataaactgcattcttgggcaggaggggtgactgaatttggagatagcagaaatcaggagagcactagcgaggtggtgaatgctaactactcagctgcattgttgggattagcatatggagacactgatcttgtggccacaaggtcaatgcttgcagcattggaaatccaggcagctcaaatgtggtgccatgtaagagagggtgataacatttatgcaccagattacacaaaggaaagtcgggtagttggagtactgctgtgggctaataagagaaacagtaatctttggtttgcgcctgcacagcggagagagtgcctgcttggaatccagctgctgcctattgtacctattactgaggaattgttctctgatgttggctatgttagggaacttgtgaagtggactgaaccggctcttattagagagggtgttggggaaggatggaaagggtttgtgtactctttgcaagggatttatgacaagaatggtgctttgaatggtcacgatgatggcaactcgcttacgaatctattatggtggatcgacagcagaggtgaggaaagagatggatgccaagtcggagagaagatttgctcagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

207

Amino Acids

23.13

Weight (kDa)

4.85

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	569
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	3 cut(s)	273, 366, 479
AgsI	TTSAA	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	113, 194, 352
AluI	AGCT	3 cut(s)	113, 194, 352
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	569
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	5 cut(s)	113, 173, 191, 352, 355
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	316
AsuHPI	GGTGA	4 cut(s)	58, 106, 233, 587
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	5 cut(s)	100, 185, 203, 339, 342
BccI	CCATC	3 cut(s)	456, 524, 581
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	5 cut(s)	114, 174, 192, 353, 356
BlsI	GCNGC	5 cut(s)	115, 175, 193, 354, 357
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	581
Bse118I	RCCGGY	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	467, 596
BseMII	CTCAG	2 cut(s)	123, 366
BseXI	GCAGC	5 cut(s)	100, 185, 203, 339, 342
BsgI	GTGCAG	1 cut(s)	303
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	132
BsmI	GAATGC	2 cut(s)	28, 103
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	145, 561
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	122, 367
BspLI	GGNNCC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	430
BssMI	GATC	2 cut(s)	145, 561
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	171, 318, 338
BstDEI	CTNAG	4 cut(s)	2, 109, 375, 616
BstF5I	GGATG	2 cut(s)	467, 596
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	148, 564
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	145, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstV1I	GCAGC	5 cut(s)	100, 185, 203, 339, 342
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	467, 596
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	171, 318, 338
CaiI	CAGNNNCTG	1 cut(s)	355
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	430
Csp6I	GTAC	3 cut(s)	272, 365, 478
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	7 cut(s)	113, 155, 194, 284, 352, 399, 434
CviKI_1	RGCY	7 cut(s)	113, 155, 194, 284, 352, 399, 434
CviQI	GTAC	3 cut(s)	272, 365, 478
DdeI	CTNAG	4 cut(s)	2, 109, 375, 616
DpnI	GATC	2 cut(s)	147, 563
DpnII	GATC	2 cut(s)	145, 561
EaeI	YGGCCR	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	212
FaiI	YATR	8 cut(s)	21, 133, 135, 210, 234, 402, 498, 556
FatI	CATG	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	5 cut(s)	114, 174, 192, 353, 356
FokI	GGATG	2 cut(s)	474, 603
Fsp4HI	GCNGC	5 cut(s)	114, 174, 192, 353, 356
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	5 cut(s)	114, 174, 192, 353, 356
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HinfI	GANTC	2 cut(s)	345, 547
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	4 cut(s)	58, 106, 233, 587
Hpy166II	GTNNAC	2 cut(s)	423, 478
Hpy188I	TCNGA	2 cut(s)	391, 602
Hpy188III	TCNNGA	2 cut(s)	74, 524
Hpy8I	GTNNAC	2 cut(s)	423, 478
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	6 cut(s)	28, 116, 173, 236, 320, 487
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	4 cut(s)	2, 109, 375, 616
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	1 cut(s)	314
Kzo9I	GATC	2 cut(s)	145, 561
LpnPI	CCDG	9 cut(s)	24, 59, 173, 200, 252, 330, 350, 362, 444
Lsp1109I	GCAGC	5 cut(s)	100, 185, 203, 339, 342
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	46, 521
MalI	GATC	2 cut(s)	147, 563
MboI	GATC	2 cut(s)	145, 561
MboII	GAAGA	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	2 cut(s)	53, 380
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	247, 580
MnlI	CCTC	7 cut(s)	35, 82, 211, 370, 439, 566, 571
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	3 cut(s)	113, 325, 352
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	2 cut(s)	28, 103
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	2 cut(s)	145, 561
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	206
NmuCI	GTSAC	2 cut(s)	46, 521
PctI	GAATGC	2 cut(s)	28, 103
PfeI	GAWTC	2 cut(s)	345, 547
PkrI	GCNGC	5 cut(s)	115, 175, 193, 354, 357
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	355
PvuII	CAGCTG	2 cut(s)	113, 352
RsaI	GTAC	3 cut(s)	273, 366, 479
RsaNI	GTAC	3 cut(s)	272, 365, 478
RseI	CAYNNNNRTG	1 cut(s)	528
SatI	GCNGC	5 cut(s)	114, 174, 192, 353, 356
Sau3AI	GATC	2 cut(s)	145, 561
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	8, 93, 115, 164, 196, 354, 370, 577
SfaNI	GCATC	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	2 cut(s)	53, 380
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	564
TasI	AATT	2 cut(s)	53, 380
TatI	WGTACW	2 cut(s)	271, 477
TfiI	GAWTC	2 cut(s)	345, 547
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	46, 521
TseI	GCWGC	5 cut(s)	113, 173, 191, 352, 355
Tsp45I	GTSAC	2 cut(s)	46, 521
TspRI	CASTG	1 cut(s)	148
XapI	RAATTY	1 cut(s)	53
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.