Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Reverse (-)

10604689 .. 10605028

Gene Structure 340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTCGGAGATGGGTTTAATTTGGAGTATAAGTGGGAAGCAAAAGGGTCCGGGGATTTGCTTATGCTGGCTCATCCTCTACATGTGAAGCTTCGAAGAATGATGACAATGGTGGCTGTTCGGAGGGACTCATGGGTGCTGAGGCCAGAGCCTGTTTCGGTTACTTGGCATTCAATTAAGGGTGTTAAGGAAGAGTCGAAAAGTGAGATCATAGCTGCATTGTGCAAAAGATGTGGAGGGTTTGAGTTTGACACCATTGCGACACGTCTTCGTATTTCTATGGGAAGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

97

Amino Acids

11.1

Weight (kDa)

9.39

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	2 cut(s)	82, 263
AgsI	TTSAA	1 cut(s)	174
AjiI	CACGTC	1 cut(s)	266
AluBI	AGCT	2 cut(s)	91, 215
AluI	AGCT	2 cut(s)	91, 215
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	1 cut(s)	5
BcnI	CCSGG	1 cut(s)	52
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	48
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	145
Bsp119I	TTCGAA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	202
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	145
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	69
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	48
CspCI	CAANNNNNGTGG	2 cut(s)	214, 249
CviAII	CATG	2 cut(s)	83, 132
CviJI	RGCY	6 cut(s)	71, 91, 116, 145, 151, 215
CviKI_1	RGCY	6 cut(s)	71, 91, 116, 145, 151, 215
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	48
FaeI	CATG	2 cut(s)	86, 135
FaiI	YATR	6 cut(s)	30, 65, 84, 133, 212, 281
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	2 cut(s)	82, 131
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	86, 135
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	128, 194
HpaII	CCGG	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	8, 123
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	218, 225
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	86, 135
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	4 cut(s)	53, 64, 159, 165
Lsp1109I	GCAGC	1 cut(s)	202
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	108, 203, 260
MluCI	AATT	2 cut(s)	19, 174
MlyI	GAGTC	2 cut(s)	122, 203
MnlI	CCTC	4 cut(s)	87, 117, 135, 230
MseI	TTAA	3 cut(s)	18, 177, 186
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	86, 135
NlaIV	GGNNCC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	94
PciI	ACATGT	1 cut(s)	82
PctI	GAATGC	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	2 cut(s)	122, 202
PpsI	GAGTC	2 cut(s)	122, 202
PscI	ACATGT	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	18, 177, 186
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	2 cut(s)	122, 203
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	3 cut(s)	93, 217, 268
SfuI	TTCGAA	1 cut(s)	94
SgeI	CNNG	9 cut(s)	63, 64, 80, 95, 144, 158, 164, 177, 276
SinI	GGWCC	1 cut(s)	48
Sse9I	AATT	2 cut(s)	19, 174
StyD4I	CCNGG	1 cut(s)	50
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	94, 197
TasI	AATT	2 cut(s)	19, 174
Tru1I	TTAA	3 cut(s)	18, 177, 186
Tru9I	TTAA	3 cut(s)	18, 177, 186
TseI	GCWGC	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	48
XceI	RCATGY	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.