Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

28424392 .. 28425571

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTACCTTACGAGCTTTTTTAGCTTTAGCTCCTCATATCATACGCCTTTTTCAGCTCTTGACTGCCTTCACTCTTCTTCTTCTTCATCACTTTGTGGGAGCTGCAGGACCCTTTTGCTTTTGCCCAGGCAAGCTCTCTCGAATCCACATTCAGTTCACACTGATATAGGGATTACACATGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

62

Amino Acids

6.72

Weight (kDa)

6.94

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	5
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	6 cut(s)	15, 24, 30, 56, 102, 134
AluI	AGCT	6 cut(s)	15, 24, 30, 56, 102, 134
ApeKI	GCWGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	127
BfaI	CTAG	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	132, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	21
BstNI	CCWGG	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	132, 184
Cfr13I	GGNCC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	6 cut(s)	15, 24, 30, 56, 102, 134
CviKI_1	RGCY	6 cut(s)	15, 24, 30, 56, 102, 134
CviQI	GTAC	1 cut(s)	4
DraIII	CACNNNGTG	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	182
FaiI	YATR	4 cut(s)	37, 42, 167, 180
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	187
GluI	GCNGC	1 cut(s)	103
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	59, 139
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	35, 99
LpnPI	CCDG	3 cut(s)	91, 112, 139
Lsp1109I	GCAGC	1 cut(s)	89
MaeI	CTAG	1 cut(s)	187
MboII	GAAGA	4 cut(s)	66, 69, 72, 75
MnlI	CCTC	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	21
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	108
PspPPI	RGGWCCY	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	7 cut(s)	9, 17, 26, 32, 58, 104, 136
SfcI	CTRYAG	1 cut(s)	103
SgeI	CNNG	7 cut(s)	24, 71, 118, 138, 139, 143, 151
SinI	GGWCC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	108
XceI	RCATGY	1 cut(s)	182
XspI	CTAG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.