Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

43325067 .. 43325477

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCCAGCTCAAATGTGGTGGCATGTAAGAGAGGGAGATAACATTTATGCACCAGATTACACAAAGGAAAATCGGGTGGTTGGAGTGCTGTGGGCTAATACGAGAGACAGTAATCTTTGGTTTGCACCTGCACAGTGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCCATTGTACCTATCACTGAGGAATTGTTCTCTGATGTTGGCTCTGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTAGTAAAGAGAGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGCAAGGGGTTTATGACAAGAATGGTGCTTTGGAGAAGATTCGGAACTTGAATGGTCACGATGATGGCAACTCGATCGCTTACGAATCTGGTATGGTGGATCCACAGCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

136

Amino Acids

15.5

Weight (kDa)

4.87

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	3 - 124	4.7e-24	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AclWI	GGATC	2 cut(s)	389, 402
AfaI	GTAC	2 cut(s)	177, 290
AgsI	TTSAA	1 cut(s)	346
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	8, 163
AluI	AGCT	2 cut(s)	8, 163
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	389, 402
AlwNI	CAGNNNCTG	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	163, 166
BamHI	GGATCC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	150, 153
BccI	CCATC	2 cut(s)	267, 353
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BcoDI	GTCTC	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	2 cut(s)	164, 167
BlsI	GCNGC	2 cut(s)	165, 168
BmiI	GGNNCC	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	241
BseGI	GGATG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	150, 153
BsgI	GTGCAG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	369, 394
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	389, 402
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssMI	GATC	2 cut(s)	369, 394
Bst4CI	ACNGT	2 cut(s)	110, 135
BstC8I	GCNNGC	2 cut(s)	6, 149
BstDEI	CTNAG	2 cut(s)	186, 248
BstF5I	GGATG	1 cut(s)	278
BstKTI	GATC	2 cut(s)	372, 397
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	369, 394
BstMCI	CGRYCG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	150, 153
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	140, 183
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	6, 149
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	176, 289
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	5 cut(s)	8, 95, 163, 210, 245
CviKI_1	RGCY	5 cut(s)	8, 95, 163, 210, 245
CviQI	GTAC	2 cut(s)	176, 289
DdeI	CTNAG	2 cut(s)	186, 248
DpnI	GATC	2 cut(s)	371, 396
DpnII	GATC	2 cut(s)	369, 394
FaeI	CATG	1 cut(s)	26
FaiI	YATR	4 cut(s)	24, 48, 309, 389
FatI	CATG	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	164, 167
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	164, 167
GluI	GCNGC	2 cut(s)	164, 167
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	1 cut(s)	26
HinfI	GANTC	3 cut(s)	156, 334, 380
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	234, 289
Hpy188I	TCNGA	2 cut(s)	202, 339
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	234, 289
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	110, 135
HpyCH4V	TGCA	4 cut(s)	50, 125, 131, 298
HpyF3I	CTNAG	2 cut(s)	186, 248
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	369, 394
LpnPI	CCDG	7 cut(s)	18, 66, 141, 161, 173, 255, 369
Lsp1109I	GCAGC	2 cut(s)	150, 153
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	371, 396
MboI	GATC	2 cut(s)	369, 394
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	3 cut(s)	25, 181, 399
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	369, 394
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	26
PaqCI	CACCTGC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	156, 334, 380
PkrI	GCNGC	2 cut(s)	165, 168
Ple19I	CGATCG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	394
PvuI	CGATCG	1 cut(s)	372
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	2 cut(s)	177, 290
RsaNI	GTAC	2 cut(s)	176, 289
RseI	CAYNNNNRTG	1 cut(s)	357
SatI	GCNGC	2 cut(s)	164, 167
Sau3AI	GATC	2 cut(s)	369, 394
SetI	ASST	5 cut(s)	10, 130, 165, 181, 410
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	1 cut(s)	191
TaaI	ACNGT	2 cut(s)	110, 135
TaqI	TCGA	1 cut(s)	368
TasI	AATT	1 cut(s)	191
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	156, 334, 380
TscAI	CASTG	2 cut(s)	140, 190
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	2 cut(s)	163, 166
Tsp45I	GTSAC	1 cut(s)	350
TspRI	CASTG	2 cut(s)	140, 190
XceI	RCATGY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.