Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003484.1

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

1281 .. 2672

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003484.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ctgccggaatctgacccacaattcgagtcggttcttgatcggttcagctcttgctaccctgtgtccggtgaggctgtgttcacaaagccgtttgctttggagtataaatgggagaagaaagggtggggagacttgcttatgctggctcatcctctacatttaaagcttattgatggtgacgattctgatattactgttttggagaatttcaagtacaaaagcattgatggtgatcttgttggtgttgtgggggattcatgggtgttgaagcctgaccctgtttcgttgattgctagagcggcgaggttggctttgattgctgaggaggtgggttatcttgatgtgattccaccgattaagaagtatttgagtgatacaattgagccttggtgggatgggacttttggtgagaatgggttcttgcatgatagtaaatggggtggcattgtgacgaaacaaggatcagtggattcgggacagatttcagtgcttgctaagattgatccagcgtgggggaggaagtatagggctcaagcttattcacttgccgcggagtatatgaacttaggcaggagggtgaattatccacgtttgagttgctttgatttgtataagttgcattcatgggcaggagggctgactgaatttggagatggtaggaatcaagagagcacgagtgaggctgtgaatgcctactactcagctgcattgttggggctagcctatggagacacccatcttgtggccactggatcaatgattgcggcattggaaattaaagctgctcaaatgtggtggcaagtaaaagagggagatagcatttatgagccagatttcactaggggaaatagggtagttggagtgctatgggctaataagagggacagcggactgtggtttgctcctccgaagtggaaagagtgccggcttggaatccaactgctacccattttacctacctctgaggaattgttctctgatgttgcctttgttaggcaacttgtggagtggacagaaccagctctgagtagagagggtgttggggaaggatggaaagggtttgtctatactttgcaagggatttacgacaaacaaggcgctttggagaagattaggaacttgaagggttatgatgattggaactcgctcactaatctgttatggtggatccatagcagaggtgaggaaggagatggttgtggaattggagagaacatatgttggtttaagcactgtcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

413

Amino Acids

46.37

Weight (kDa)

5.13

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	742
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	551
AciI	CCGC	5 cut(s)	299, 549, 551, 764, 888
AclWI	GGATC	5 cut(s)	469, 497, 760, 1162, 1175
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	2 cut(s)	205, 644
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	65, 512, 742, 993
AgsI	TTSAA	3 cut(s)	211, 268, 1123
AluBI	AGCT	6 cut(s)	48, 166, 536, 704, 782, 1022
AluI	AGCT	6 cut(s)	48, 166, 536, 704, 782, 1022
Alw21I	GWGCWC	1 cut(s)	674
Alw26I	GTCTC	2 cut(s)	123, 723
AlwI	GGATC	5 cut(s)	469, 497, 760, 1162, 1175
AoxI	GGCC	1 cut(s)	744
ApeKI	GCWGC	2 cut(s)	704, 782
ApoI	RAATTY	2 cut(s)	205, 644
ArsI	GACNNNNNNTTYG	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	1100
AsuHPI	GGTGA	6 cut(s)	80, 188, 242, 419, 589, 1193
AsuNHI	GCTAGC	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	746
BamHI	GGATCC	1 cut(s)	1167
BanII	GRGCYC	1 cut(s)	532
BauI	CACGAG	1 cut(s)	673
Bbv12I	GWGCWC	1 cut(s)	674
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	691, 769
BccI	CCATC	7 cut(s)	167, 221, 389, 647, 744, 1044, 1187
BceAI	ACGGC	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	123, 723
BfaI	CTAG	3 cut(s)	294, 719, 840
BfoI	RGCGCY	1 cut(s)	1101
BisI	GCNGC	5 cut(s)	300, 549, 705, 765, 783
BlsI	GCNGC	5 cut(s)	301, 550, 706, 766, 784
BmiI	GGNNCC	1 cut(s)	1169
BmtI	GCTAGC	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	386, 549
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 512, 742, 993
Bse118I	RCCGGY	1 cut(s)	924
Bse1I	ACTGG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	386, 549
BseGI	GGATG	3 cut(s)	148, 400, 1055
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	4 cut(s)	65, 512, 742, 993
BseMII	CTCAG	4 cut(s)	312, 714, 954, 1016
BseNI	ACTGG	1 cut(s)	754
BseRI	GAGGAG	2 cut(s)	338, 894
BseXI	GCAGC	2 cut(s)	691, 769
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	674
BsiSI	CCGG	3 cut(s)	5, 66, 925
BslFI	GGGAC	3 cut(s)	412, 489, 896
BslI	CCNNNNNNNGG	4 cut(s)	65, 512, 742, 993
BsmAI	GTCTC	2 cut(s)	123, 723
BsmFI	GGGAC	3 cut(s)	412, 489, 896
BsmI	GAATGC	2 cut(s)	619, 694
BsnI	GGCC	1 cut(s)	746
Bsp1286I	GDGCHC	2 cut(s)	532, 674
Bsp143I	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
BspACI	CCGC	5 cut(s)	299, 549, 551, 764, 888
BspANI	GGCC	1 cut(s)	746
BspCNI	CTCAG	4 cut(s)	313, 713, 955, 1017
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	1169
BspOI	GCTAGC	1 cut(s)	722
BspPI	GGATC	5 cut(s)	469, 497, 760, 1162, 1175
BsrBI	CCGCTC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	754
BssAI	RCCGGY	1 cut(s)	924
BssECI	CCNNGG	2 cut(s)	386, 549
BssMI	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
BssSI	CACGAG	1 cut(s)	673
BssT1I	CCWWGG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	673
Bst4CI	ACNGT	3 cut(s)	196, 894, 1235
BstC8I	GCNNGC	4 cut(s)	144, 492, 720, 926
BstDEI	CTNAG	6 cut(s)	321, 495, 565, 700, 963, 1025
BstDSI	CCRYGG	1 cut(s)	549
BstENI	CCTNNNNNAGG	1 cut(s)	991
BstF5I	GGATG	3 cut(s)	148, 400, 1055
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	1101
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	6 cut(s)	40, 235, 464, 505, 755, 1170
BstMAI	GTCTC	2 cut(s)	123, 723
BstMBI	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 308, 317, 689
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	2 cut(s)	691, 769
BstX2I	RGATCY	1 cut(s)	1167
BstYI	RGATCY	1 cut(s)	1167
BsuRI	GGCC	1 cut(s)	746
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	148, 400, 1055
BtsIMutI	CAGTG	5 cut(s)	471, 492, 747, 1231, 1237
Cac8I	GCNNGC	4 cut(s)	144, 492, 720, 926
CfoI	GCGC	1 cut(s)	1100
Cfr10I	RCCGGY	1 cut(s)	924
Cfr42I	CCGCGG	1 cut(s)	552
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	2 cut(s)	776, 811
CviAII	CATG	3 cut(s)	258, 425, 624
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	6 cut(s)	321, 495, 565, 700, 963, 1025
DpnI	GATC	6 cut(s)	39, 234, 463, 504, 754, 1169
DpnII	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
DraI	TTTAAA	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	744
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	991
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	3 cut(s)	261, 428, 627
FaqI	GGGAC	3 cut(s)	412, 489, 896
FatI	CATG	3 cut(s)	257, 424, 623
FauNDI	CATATG	1 cut(s)	1217
Fnu4HI	GCNGC	5 cut(s)	300, 549, 705, 765, 783
FokI	GGATG	3 cut(s)	135, 407, 1062
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	5 cut(s)	300, 549, 705, 765, 783
FspBI	CTAG	3 cut(s)	294, 719, 840
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	5 cut(s)	300, 549, 705, 765, 783
HaeII	RGCGCY	1 cut(s)	1101
HaeIII	GGCC	1 cut(s)	746
HapII	CCGG	3 cut(s)	5, 66, 925
HhaI	GCGC	1 cut(s)	1100
Hin1II	CATG	3 cut(s)	261, 428, 627
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HindIII	AAGCTT	2 cut(s)	164, 534
HinfI	GANTC	8 cut(s)	8, 26, 182, 254, 346, 470, 661, 933
HpaII	CCGG	3 cut(s)	5, 66, 925
HphI	GGTGA	6 cut(s)	80, 188, 242, 419, 589, 1193
Hpy166II	GTNNAC	2 cut(s)	81, 1011
Hpy188I	TCNGA	6 cut(s)	13, 187, 909, 964, 979, 1026
Hpy188III	TCNNGA	4 cut(s)	35, 338, 474, 665
Hpy8I	GTNNAC	2 cut(s)	81, 1011
HpyAV	CCTTC	3 cut(s)	1040, 1117, 1181
HpyCH4III	ACNGT	3 cut(s)	196, 894, 1235
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	4 cut(s)	424, 619, 707, 1075
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 308, 317, 689
HpyF3I	CTNAG	6 cut(s)	321, 495, 565, 700, 963, 1025
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	3 cut(s)	261, 428, 627
HspAI	GCGC	1 cut(s)	1098
KroI	GCCGGC	1 cut(s)	924
KroNI	GCCGGC	1 cut(s)	926
KspI	CCGCGG	1 cut(s)	552
Kzo9I	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
LmnI	GCTCC	1 cut(s)	907
Lsp1109I	GCAGC	2 cut(s)	691, 769
MaeI	CTAG	3 cut(s)	294, 719, 840
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	3 cut(s)	176, 448, 1235
MalI	GATC	6 cut(s)	39, 234, 463, 504, 754, 1169
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
MboII	GAAGA	2 cut(s)	127, 1120
MfeI	CAATTG	1 cut(s)	378
MflI	RGATCY	1 cut(s)	1167
MhlI	GDGCHC	2 cut(s)	532, 674
MlsI	TGGCCA	1 cut(s)	746
MluCI	AATT	8 cut(s)	20, 205, 378, 580, 644, 774, 968, 1203
MluNI	TGGCCA	1 cut(s)	746
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	838, 961
Mox20I	TGGCCA	1 cut(s)	746
MroNI	GCCGGC	1 cut(s)	924
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	746
MseI	TTAA	4 cut(s)	161, 357, 777, 1227
Msp20I	TGGCCA	1 cut(s)	746
MspA1I	CMGCKG	3 cut(s)	551, 704, 888
MspI	CCGG	3 cut(s)	5, 66, 925
MunI	CAATTG	1 cut(s)	378
Mva1269I	GAATGC	2 cut(s)	619, 694
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	4 cut(s)	299, 308, 317, 689
NaeI	GCCGGC	1 cut(s)	926
NdeI	CATATG	1 cut(s)	1217
NdeII	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
NgoMIV	GCCGGC	1 cut(s)	924
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	3 cut(s)	261, 428, 627
NlaIV	GGNNCC	1 cut(s)	1169
NmuCI	GTSAC	3 cut(s)	176, 448, 1235
PctI	GAATGC	2 cut(s)	619, 694
PdiI	GCCGGC	1 cut(s)	926
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	7 cut(s)	8, 182, 254, 346, 470, 661, 933
PflMI	CCANNNNNTGG	1 cut(s)	742
PkrI	GCNGC	5 cut(s)	301, 550, 706, 766, 784
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	1169
PsuI	RGATCY	1 cut(s)	1167
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacII	CCGCGG	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	161, 357, 777, 1227
SatI	GCNGC	5 cut(s)	300, 549, 705, 765, 783
Sau3AI	GATC	6 cut(s)	37, 232, 461, 502, 752, 1167
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	532, 674
Sfr303I	CCGCGG	1 cut(s)	552
SgrBI	CCGCGG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	8 cut(s)	20, 205, 378, 580, 644, 774, 968, 1203
SsiI	CCGC	5 cut(s)	299, 549, 551, 764, 888
SspMI	CTAG	3 cut(s)	294, 719, 840
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	196, 894, 1235
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	1 cut(s)	24
TasI	AATT	8 cut(s)	20, 205, 378, 580, 644, 774, 968, 1203
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	3 cut(s)	302, 551, 767
TfiI	GAWTC	7 cut(s)	8, 182, 254, 346, 470, 661, 933
Tru1I	TTAA	4 cut(s)	161, 357, 777, 1227
Tru9I	TTAA	4 cut(s)	161, 357, 777, 1227
TscAI	CASTG	4 cut(s)	471, 492, 754, 1238
TseFI	GTSAC	3 cut(s)	176, 448, 1235
TseI	GCWGC	2 cut(s)	704, 782
Tsp45I	GTSAC	3 cut(s)	176, 448, 1235
TspDTI	ATGAA	3 cut(s)	246, 575, 612
TspRI	CASTG	4 cut(s)	471, 492, 754, 1238
Van91I	CCANNNNNTGG	1 cut(s)	742
XagI	CCTNNNNNAGG	1 cut(s)	991
XapI	RAATTY	2 cut(s)	205, 644
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	294, 719, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.