Rh2AG595100

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
82551671 .. 82552591
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG595100.1

Sequence Viewer

Length: 921 bp
ATGGCTTCCAATAATATGACCTTGATGACATTCTTCCTCATCATCTCCCTCGCTTTTTTCATCCTCCCTCAAACCCAAGCCAGGGTACTACTGTCCGAAACGCAAGCAACTCCGGCCACCGGCTTCCTCTTTCCGAAAGCCGAGTCCACAGTTCTCCCTGACCCTTCACCGTTCTTTGCCCCAAACCTCCTCCAAACCCCACTCCCCACAAACTCTTTCTTCCAAAACTTTGTACTCAACAATGGCGACCAGCCGGAATATTTCCACCCCTACCATTTCAGATCCTCCAACTCCTCCCTCTCTCTCTCCTACCCGACTCGCCTTGCCACCTCCGTTTCCATATCCCAGAACTTCACCCCTGAACTCACCATCTCCGCCACCCAAAACAACCAAGAACGTCATGTAGTCTCTTCCTTCAGTGACCTCGGCGTCACTCTAGACTTCCCCTCCTCCAATCTCCGCTTCTTCCTCGTCAAGGGAAGCCCCTACTTGACATGCAATGTGTCTAATCCCACCGCGCTTTCCATTTCCACCGCTAGTTCAATCACTTCTTTGTTTCCAAACGCTCAACGCAACAAGTACACATTAAATCTCGACAACAGTCAGACAATGCTGGTGTACTCGTCCTCTCCGATTGGTCTCACCATCAGCAACCCATCACTGATCACTTCCGACGCATTCACCGGGGTTATGAGGGTTGCATTGTTGCCGCCAGGCTCTCAAGATCTCGAGGCAGTTCTAGACCAGTTCAGTTCTTCTTATCCGGTTTCGGGCGAGGCAGTGTTCACAGGGCCTTTTACATTGGAGTATAGATGGGTGAAAGAAGGAAATGGAGATTTGCTTATGCTAGCTCATCCTCTCCATCAACAACTTCTGTCTGTTCAGGACAGTAATGCCACTGTTCTTGACTATCTCAAATAA

Protein Analysis

306

Amino Acids

33.58

Weight (kDa)

5.1

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_81 PF03639 64 - 298 3.3e-49 Glycosyl hydrolase family 81 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AccII CGCG 1 cut(s) 518
AciI CCGC 5 cut(s) 375, 460, 516, 534, 710
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 400
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 4 cut(s) 87, 234, 581, 620
AfiI CCNNNNNNNGG 5 cut(s) 81, 82, 119, 475, 770
AgsI TTSAA 1 cut(s) 543
AjnI CCWGG 2 cut(s) 80, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 1 cut(s) 851
AluI AGCT 1 cut(s) 851
Alw26I GTCTC 2 cut(s) 412, 644
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 2 cut(s) 114, 791
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 1 cut(s) 791
AsuC2I CCSGG 1 cut(s) 685
AsuHPI GGTGA 6 cut(s) 159, 346, 358, 634, 673, 829
AsuNHI GCTAGC 1 cut(s) 847
AvaI CYCGRG 1 cut(s) 728
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BccI CCATC 5 cut(s) 377, 653, 664, 807, 870
BciT130I CCWGG 2 cut(s) 82, 714
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 2 cut(s) 412, 644
BfaI CTAG 4 cut(s) 437, 537, 740, 848
BglII AGATCT 1 cut(s) 724
BisI GCNGC 1 cut(s) 710
BlsI GCNGC 1 cut(s) 711
Bme1390I CCNGG 3 cut(s) 82, 685, 714
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 1 cut(s) 791
BmrFI CCNGG 3 cut(s) 82, 685, 714
BmtI GCTAGC 1 cut(s) 851
BoxI GACNNNNGTC 1 cut(s) 600
BpuEI CTTGAG 1 cut(s) 705
BpuMI CCSGG 1 cut(s) 685
BsaHI GRCGYC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 81, 424, 684
BsaWI WCCGGW 1 cut(s) 763
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 5 cut(s) 81, 82, 119, 475, 770
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 2 cut(s) 82, 714
BseDI CCNNGG 3 cut(s) 81, 424, 684
BseGI GGATG 2 cut(s) 60, 853
BseLI CCNNNNNNNGG 5 cut(s) 81, 82, 119, 475, 770
BseMI GCAATG 1 cut(s) 505
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 3 cut(s) 179, 283, 439
Bsh1236I CGCG 1 cut(s) 518
BshFI GGCC 2 cut(s) 116, 793
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 5 cut(s) 113, 120, 254, 684, 764
BslI CCNNNNNNNGG 5 cut(s) 81, 82, 119, 475, 770
BsmAI GTCTC 2 cut(s) 412, 644
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 2 cut(s) 116, 793
Bso31I GGTCTC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 728
Bsp143I GATC 3 cut(s) 281, 663, 724
BspACI CCGC 5 cut(s) 375, 460, 516, 534, 710
BspANI GGCC 2 cut(s) 116, 793
BspFNI CGCG 1 cut(s) 518
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 745
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 3 cut(s) 81, 424, 684
BssMI GATC 3 cut(s) 281, 663, 724
BssNI GRCGYC 1 cut(s) 429
Bst2UI CCWGG 2 cut(s) 82, 714
Bst4CI ACNGT 6 cut(s) 93, 151, 171, 602, 890, 901
Bst6I CTCTTC 1 cut(s) 415
BstACI GRCGYC 1 cut(s) 429
BstC8I GCNNGC 2 cut(s) 105, 849
BstENI CCTNNNNNAGG 1 cut(s) 473
BstF5I GGATG 2 cut(s) 60, 853
BstFNI CGCG 1 cut(s) 518
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 3 cut(s) 284, 666, 727
BstMAI GTCTC 2 cut(s) 412, 644
BstMBI GATC 3 cut(s) 281, 663, 724
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 2 cut(s) 82, 714
BstNSI RCATGY 1 cut(s) 498
BstPAI GACNNNNGTC 1 cut(s) 600
BstSCI CCNGG 3 cut(s) 80, 683, 712
BstUI CGCG 1 cut(s) 518
BstX2I RGATCY 2 cut(s) 281, 724
BstYI RGATCY 2 cut(s) 281, 724
BsuRI GGCC 2 cut(s) 116, 793
BtsCI GGATG 2 cut(s) 60, 853
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 4 cut(s) 424, 659, 786, 897
Cac8I GCNNGC 2 cut(s) 105, 849
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 791
CseI GACGC 2 cut(s) 418, 683
Csp6I GTAC 4 cut(s) 86, 233, 580, 619
CspCI CAANNNNNGTGG 2 cut(s) 886, 921
CviAII CATG 2 cut(s) 401, 495
CviQI GTAC 4 cut(s) 86, 233, 580, 619
DpnI GATC 3 cut(s) 283, 665, 726
DpnII GATC 3 cut(s) 281, 663, 724
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
EciI GGCGGA 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 728
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 791
EcoRII CCWGG 2 cut(s) 80, 712
FaeI CATG 2 cut(s) 404, 498
FaiI YATR 7 cut(s) 17, 341, 402, 496, 692, 810, 845
FatI CATG 2 cut(s) 400, 494
FbaI TGATCA 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 710
FokI GGATG 2 cut(s) 47, 840
Fsp4HI GCNGC 1 cut(s) 710
FspBI CTAG 4 cut(s) 437, 537, 740, 848
GlaI GCGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 710
HaeIII GGCC 2 cut(s) 116, 793
HapII CCGG 5 cut(s) 113, 120, 254, 684, 764
HgaI GACGC 2 cut(s) 418, 683
HhaI GCGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 2 cut(s) 404, 498
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HinfI GANTC 2 cut(s) 143, 316
HpaII CCGG 5 cut(s) 113, 120, 254, 684, 764
HphI GGTGA 6 cut(s) 159, 346, 358, 634, 673, 829
Hpy166II GTNNAC 4 cut(s) 147, 582, 619, 786
Hpy188I TCNGA 6 cut(s) 97, 135, 281, 606, 633, 673
Hpy188III TCNNGA 7 cut(s) 437, 593, 722, 728, 740, 884, 905
Hpy8I GTNNAC 4 cut(s) 147, 582, 619, 786
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 3 cut(s) 174, 424, 818
HpyCH4III ACNGT 6 cut(s) 93, 151, 171, 602, 890, 901
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 2 cut(s) 498, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 397
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 2 cut(s) 404, 498
HspAI GCGC 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 3 cut(s) 281, 663, 724
MaeI CTAG 4 cut(s) 437, 537, 740, 848
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 2 cut(s) 419, 430
MalI GATC 3 cut(s) 283, 665, 726
MboI GATC 3 cut(s) 281, 663, 724
MboII GAAGA 5 cut(s) 25, 211, 402, 457, 747
MflI RGATCY 2 cut(s) 281, 724
MlyI GAGTC 2 cut(s) 152, 310
MmeI TCCRAC 2 cut(s) 312, 696
MseI TTAA 1 cut(s) 587
MspI CCGG 5 cut(s) 113, 120, 254, 684, 764
MspR9I CCNGG 3 cut(s) 82, 685, 714
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 2 cut(s) 82, 714
MvnI CGCG 1 cut(s) 518
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 685
NdeII GATC 3 cut(s) 281, 663, 724
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 2 cut(s) 404, 498
NmeAIII GCCGAG 2 cut(s) 166, 405
NmuCI GTSAC 2 cut(s) 419, 430
NspI RCATGY 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 728
PcsI WCGNNNNNNNCGW 1 cut(s) 629
PctI GAATGC 1 cut(s) 677
PkrI GCNGC 1 cut(s) 711
PleI GAGTC 2 cut(s) 151, 310
PpsI GAGTC 2 cut(s) 151, 310
PshAI GACNNNNGTC 1 cut(s) 600
Psp6I CCWGG 2 cut(s) 80, 712
PspGI CCWGG 2 cut(s) 80, 712
PspPI GGNCC 1 cut(s) 791
PsuI RGATCY 2 cut(s) 281, 724
RsaI GTAC 4 cut(s) 87, 234, 581, 620
RsaNI GTAC 4 cut(s) 86, 233, 580, 619
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 1 cut(s) 710
Sau3AI GATC 3 cut(s) 281, 663, 724
Sau96I GGNCC 1 cut(s) 791
SchI GAGTC 2 cut(s) 152, 310
ScrFI CCNGG 3 cut(s) 82, 685, 714
SetI ASST 6 cut(s) 23, 189, 332, 400, 426, 853
Sfr274I CTCGAG 1 cut(s) 728
SlaI CTCGAG 1 cut(s) 728
SmlI CTYRAG 2 cut(s) 720, 728
SmoI CTYRAG 2 cut(s) 720, 728
SsiI CCGC 5 cut(s) 375, 460, 516, 534, 710
SspI AATATT 1 cut(s) 260
SspMI CTAG 4 cut(s) 437, 537, 740, 848
StyD4I CCNGG 3 cut(s) 80, 683, 712
TaaI ACNGT 6 cut(s) 93, 151, 171, 602, 890, 901
TaiI ACGT 1 cut(s) 400
TaqI TCGA 2 cut(s) 594, 729
TatI WGTACW 3 cut(s) 232, 579, 618
TauI GCSGC 1 cut(s) 712
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 4 cut(s) 424, 666, 786, 904
TseFI GTSAC 2 cut(s) 419, 430
Tsp45I GTSAC 2 cut(s) 419, 430
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 4 cut(s) 424, 666, 786, 904
XagI CCTNNNNNAGG 1 cut(s) 473
XbaI TCTAGA 2 cut(s) 436, 739
XceI RCATGY 1 cut(s) 498
XhoI CTCGAG 1 cut(s) 728
XspI CTAG 4 cut(s) 437, 537, 740, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.