Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

5747629 .. 5747931

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1081500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGACTTCTATATGCCTGCTCAACAATCAACTTGAAACTTACCAGCGACACAAACTCGTAACTTCTGGTGGGTTTTCTGGGATCATCCGGATAGCTATGTTGCCGAGTTCTAATCCAAAATCCGAGTCATTTCTGGACAAGTTCAGTTCTTGCTACCCGGTTTCCGGCGATGGAGCTTTCACAAAACAGTTTTGTTTGGAGTATAAGTGGGAAAAGAAGGGGTGTGGGGATCTGATAATATGCTTGCTCATACCCTCCACCTGCAGCTTGTCTCTGTTGATGAAAGTACTGCAACTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

101

Amino Acids

11.09

Weight (kDa)

8.57

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_81	PF03639	10 - 81	2.5e-11	Glycosyl hydrolase family 81 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	87
AclWI	GGATC	2 cut(s)	89, 237
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	3 cut(s)	95, 176, 267
AluI	AGCT	3 cut(s)	95, 176, 267
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	89, 237
Aor13HI	TCCGGA	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	264
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AsuC2I	CCSGG	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
BmcAI	AGTACT	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	87
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	88, 158, 165
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	276
Bsp13I	TCCGGA	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	81, 229
BspEI	TCCGGA	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	266
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	89, 237
BsrI	ACTGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	81, 229
Bst4CI	ACNGT	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	17, 245
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	2 cut(s)	84, 232
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	2 cut(s)	81, 229
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	17, 245
Csp6I	GTAC	1 cut(s)	287
CviJI	RGCY	3 cut(s)	95, 176, 267
CviKI_1	RGCY	3 cut(s)	95, 176, 267
CviQI	GTAC	1 cut(s)	287
DpnI	GATC	2 cut(s)	83, 231
DpnII	GATC	2 cut(s)	81, 229
FaiI	YATR	6 cut(s)	11, 13, 98, 204, 241, 251
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	265
HapII	CCGG	3 cut(s)	88, 158, 165
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	3 cut(s)	88, 158, 165
Hpy188I	TCNGA	2 cut(s)	124, 234
Hpy188III	TCNNGA	2 cut(s)	88, 134
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	264, 292
Kpn2I	TCCGGA	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	81, 229
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	83, 231
MboI	GATC	2 cut(s)	81, 229
MflI	RGATCY	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	1 cut(s)	265
MroI	TCCGGA	1 cut(s)	87
MspI	CCGG	3 cut(s)	88, 158, 165
MspR9I	CCNGG	1 cut(s)	158
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	2 cut(s)	81, 229
NmeAIII	GCCGAG	1 cut(s)	129
PaqCI	CACCTGC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	266
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	81, 229
ScaI	AGTACT	1 cut(s)	288
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	4 cut(s)	97, 178, 263, 269
SfcI	CTRYAG	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	286
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.