Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

37487316 .. 37487821

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACTATGCATGTGGCTGTTTTGGAGGGTGTTAAGTATAGGAACATTGATGGTGAGCTTGTTGGTGTTGTAGGGGACTCGTGGGTGCTGAGGCCAGAGCCTGTTTCGATTACTTGCCATTCGATTAAGGGTGTTAAGGAAGAGTCGAAAAGTGAGATCATGGCTGCATTGTGCCAAGATGTGGAGGGGAAGTTGGTTGCCAGGGCGGCGAGGCTGGCTTTGATTGCTGAGGAGGTGGGTTATGTTGATGTGATTCTGGCGATTGAGAAGTACTTGAGGGATGCAATTGAGCCATGGTTTTGGATGGGACTTTTGGTGGGAATGGGTTTTTGTATGAGAGTGAATGGGGTGGCATTGTTACTAAACAAGGATCATTGGATTCTGGTGCAGATGTCGGGTTTGGAGTTTACAATTGAAAGTACTAGAATGGCCGGGGGGGGGATAGGAAACAAATTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

153

Amino Acids

16.82

Weight (kDa)

5.38

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	181
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	1 cut(s)	378
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	2 cut(s)	272, 421
AfiI	CCNNNNNNNGG	2 cut(s)	181, 438
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AlwI	GGATC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	92, 429
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	452
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	65
BauI	CACGAG	1 cut(s)	79
BbvCI	CCTCAGC	2 cut(s)	89, 228
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	44, 298
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	433
BfaI	CTAG	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	165, 207
BlsI	GCNGC	2 cut(s)	166, 208
BmcAI	AGTACT	2 cut(s)	272, 421
Bme1390I	CCNGG	2 cut(s)	202, 433
BmrFI	CCNGG	2 cut(s)	202, 433
BmsI	GCATC	1 cut(s)	271
Bpu10I	CCTNAGC	2 cut(s)	89, 228
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	3 cut(s)	201, 293, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 438
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	3 cut(s)	201, 293, 432
BseGI	GGATG	2 cut(s)	286, 309
BseLI	CCNNNNNNNGG	2 cut(s)	181, 438
BseMII	CTCAG	2 cut(s)	80, 219
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	2 cut(s)	94, 431
BsiSI	CCGG	1 cut(s)	432
BslFI	GGGAC	2 cut(s)	89, 321
BslI	CCNNNNNNNGG	2 cut(s)	181, 438
BsmFI	GGGAC	2 cut(s)	89, 321
BsnI	GGCC	2 cut(s)	94, 431
Bsp143I	GATC	2 cut(s)	156, 370
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	94, 431
BspCNI	CTCAG	2 cut(s)	81, 220
BspPI	GGATC	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	201, 293, 432
BssMI	GATC	2 cut(s)	156, 370
BssSI	CACGAG	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	293
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	89, 228
BstDSI	CCRYGG	1 cut(s)	293
BstF5I	GGATG	2 cut(s)	286, 309
BstKTI	GATC	2 cut(s)	159, 373
BstMBI	GATC	2 cut(s)	156, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 215, 224
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	200, 431
BstV1I	GCAGC	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	94, 431
BtgI	CCRYGG	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	286, 309
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	271, 420
CviAII	CATG	3 cut(s)	11, 160, 294
CviJI	RGCY	9 cut(s)	17, 58, 94, 100, 164, 214, 218, 292, 431
CviKI_1	RGCY	9 cut(s)	17, 58, 94, 100, 164, 214, 218, 292, 431
CviQI	GTAC	2 cut(s)	271, 420
DdeI	CTNAG	2 cut(s)	89, 228
DpnI	GATC	2 cut(s)	158, 372
DpnII	GATC	2 cut(s)	156, 370
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	3 cut(s)	14, 163, 297
FaiI	YATR	7 cut(s)	8, 12, 39, 161, 243, 295, 335
FaqI	GGGAC	2 cut(s)	89, 321
FatI	CATG	3 cut(s)	10, 159, 293
Fnu4HI	GCNGC	2 cut(s)	165, 207
FokI	GGATG	2 cut(s)	293, 316
Fsp4HI	GCNGC	2 cut(s)	165, 207
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	2 cut(s)	165, 207
HaeIII	GGCC	2 cut(s)	94, 431
HapII	CCGG	1 cut(s)	432
Hin1II	CATG	3 cut(s)	14, 163, 297
HinfI	GANTC	4 cut(s)	77, 143, 253, 379
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	408
Hpy8I	GTNNAC	1 cut(s)	408
HpyCH4V	TGCA	4 cut(s)	10, 167, 284, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 215, 224
HpyF3I	CTNAG	2 cut(s)	89, 228
Hsp92II	CATG	3 cut(s)	14, 163, 297
Kzo9I	GATC	2 cut(s)	156, 370
LpnPI	CCDG	8 cut(s)	108, 114, 187, 200, 214, 242, 368, 445
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	2 cut(s)	158, 372
MboI	GATC	2 cut(s)	156, 370
MboII	GAAGA	1 cut(s)	152
MfeI	CAATTG	2 cut(s)	285, 411
MluCI	AATT	3 cut(s)	285, 411, 452
MlyI	GAGTC	2 cut(s)	71, 152
MnlI	CCTC	7 cut(s)	19, 84, 178, 204, 223, 226, 270
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	3 cut(s)	33, 126, 135
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	2 cut(s)	202, 433
MunI	CAATTG	2 cut(s)	285, 411
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	3 cut(s)	206, 215, 224
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	2 cut(s)	156, 370
NlaIII	CATG	3 cut(s)	14, 163, 297
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	253, 379
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	166, 208
PleI	GAGTC	2 cut(s)	71, 151
PpsI	GAGTC	2 cut(s)	71, 151
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	272, 421
RsaNI	GTAC	2 cut(s)	271, 420
SaqAI	TTAA	3 cut(s)	33, 126, 135
SatI	GCNGC	2 cut(s)	165, 207
Sau3AI	GATC	2 cut(s)	156, 370
ScaI	AGTACT	2 cut(s)	272, 421
SchI	GAGTC	2 cut(s)	71, 152
ScrFI	CCNGG	2 cut(s)	202, 433
SetI	ASST	2 cut(s)	60, 237
SfaNI	GCATC	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	3 cut(s)	285, 411, 452
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	200, 431
StyI	CCWWGG	1 cut(s)	293
TaqI	TCGA	3 cut(s)	107, 122, 146
TasI	AATT	3 cut(s)	285, 411, 452
TatI	WGTACW	2 cut(s)	270, 419
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	253, 379
Tru1I	TTAA	3 cut(s)	33, 126, 135
Tru9I	TTAA	3 cut(s)	33, 126, 135
TseI	GCWGC	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	1 cut(s)	423
ZrmI	AGTACT	2 cut(s)	272, 421
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.