Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

37490836 .. 37491205

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45391

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGTATAAGCCTCAAGCTTATTCATTTGCCGCGGATTTTATGAACTTAATTAGAGAGGAGGTCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAACTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTATGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGGGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

94

Amino Acids

10.44

Weight (kDa)

4.61

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	9 - 93	6.5e-15	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	204
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	33, 35
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	20, 194, 282
AluI	AGCT	3 cut(s)	20, 194, 282
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	173, 191
AsuHPI	GGTGA	1 cut(s)	106
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	185, 203
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	33, 174, 192
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	3 cut(s)	34, 175, 193
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	206
BmrFI	CCNGG	1 cut(s)	188
Bpu1102I	GCTNAGC	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	185, 203
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	145
Bsp1720I	GCTNAGC	1 cut(s)	278
BspACI	CCGC	2 cut(s)	33, 35
BspANI	GGCC	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	185, 203
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	171
Cfr42I	CCGCGG	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	5 cut(s)	13, 20, 155, 194, 282
CviKI_1	RGCY	5 cut(s)	13, 20, 155, 194, 282
CviQI	GTAC	1 cut(s)	272
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	212
FaiI	YATR	7 cut(s)	9, 44, 133, 135, 152, 210, 234
FatI	CATG	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	3 cut(s)	33, 174, 192
Fsp4HI	GCNGC	3 cut(s)	33, 174, 192
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	33, 174, 192
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	67, 74
HpyCH4V	TGCA	3 cut(s)	116, 173, 236
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	1 cut(s)	212
KspI	CCGCGG	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	52, 59, 144, 173, 200, 252
Lsp1109I	GCAGC	2 cut(s)	185, 203
MaeI	CTAG	1 cut(s)	84
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	5 cut(s)	24, 52, 55, 82, 211
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	35
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	34, 175, 193
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SacII	CCGCGG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	33, 174, 192
Sau3AI	GATC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	5 cut(s)	22, 66, 93, 196, 284
Sfr303I	CCGCGG	1 cut(s)	36
SgrBI	CCGCGG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	2 cut(s)	33, 35
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	186
TasI	AATT	1 cut(s)	51
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	2 cut(s)	173, 191
TspDTI	ATGAA	3 cut(s)	15, 17, 59
TspRI	CASTG	1 cut(s)	148
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.