Rorug02G0265900

Endo-1,3(4)-beta-glucanase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
28113320 .. 28123740
10421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0265900.1

Sequence Viewer

Length: 1251 bp
ATGTGCAAGATTTTGATGAATGAGATTGAGAACTGGCTTAGGGACTCTGGGATTGAGAGGCTTGTTTTGCCTTTGGCGCAAAGTGCGCTGAAGACATGGACTAGTAGTTCGATTAGGTTTTTGACTATGACTGAGGATGAGAAAGCAGATCTCTTCCCATCAGTACTTATGATTGCATGGATTACCAGGACAGTGCTATGTGTTAGAAACAACTCTGGAAGAATAATGAGAACGGTGATAATGTCTGTGAATGGCTACTGTTTCTCCCGTTGGAAAATGGAGGAGAACCGTACTCGTCTCAGCAGCAGCAGCAATGGCTCCTCGAAGCTTCCGATCAGACGCCGCCTTAGAAGCTCTATCCAAAGCCTCCGACGAAAAAGTCCCCAACTTGCTTCTCTACAACTACCCTTCTTTCTCCGCTCTCTTCGCTCACCTCTTCCACTCTCGCCTCAACCTCCCTTCTCCTCCGTCGAACCCTTCAGGGTCGATGATTTGTGTACTCGAGGACTGGAGAGGTGCTATTTCCTTGATTTTCTTGGCCCCAAAGGATTTGCGGTCGAGTTTGCAAGCAGAGCTTCGTGCGAGGTGATTGCTTTCGATCATCGGAAATCTGTACTTTCCGACAAGGATTGCCCGGACAATCTCACATTTCGAGTGAATACTGAAAAGAGTAGCTCCTTTGCTGTGTATGATTACTTCTCTGCTAAGCTTGCAGATATTGAATGTCGTAATGGAATGGATGCAAGTTTGTTAGAAGTTGAGGCCAGGGATCGTGTGGAGATGGTGCTTAAGTACATTGAGGATGGAGATCTCCGTCGCTGGAGATTAGGGCGTTTAATATTGGACTTGTTACTGGAGATAAGTGCTATGGATGTTATTGCTAAGGGAAAGTCTTATATTTCTGCTCGACAAAAAGCTGCAAAAAAGTTACTGGATAAATCTTTGAAAATAAGGTTGGGCAGAGGATTTTATGGGGAGTGTCTGGGAGTGAGAGCTGATGGGAATTCCGAGTTAAGCGATGAAATTGGCAAGCAGCTTAGTGTGAAAAGTGCTGCTGCTGGTCTTAGGCCTATTGGAGCTGTTATATACATGCAACGGAAAAACCTCAAAATGTGCTTAAGGAGTATTGATACTGCTACCGATACCTCTGAAGTCGCAAAGGCATATGGGGGAGGAGGCACCCCAAGTTGTAGTTCCTTTATTATAAGGATGGATGAGTACAATCAGTGGGTATCAGGAAATTCAAGATGA

Protein Analysis

416

Amino Acids

46.91

Weight (kDa)

9.47

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 1 - 66 7e-08 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1205
AasI GACNNNNNNGTC 1 cut(s) 378
AccB1I GGYRCC 1 cut(s) 1178
AccBSI CCGCTC 1 cut(s) 420
AciI CCGC 3 cut(s) 343, 418, 554
AclWI GGATC 1 cut(s) 777
AcsI RAATTY 2 cut(s) 1003, 1240
AcuI CTGAAG 3 cut(s) 110, 463, 1170
AcyI GRCGYC 1 cut(s) 340
AfaI GTAC 6 cut(s) 165, 292, 499, 615, 794, 1220
AflII CTTAAG 2 cut(s) 788, 1117
AgsI TTSAA 3 cut(s) 722, 946, 1245
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 2 cut(s) 185, 764
AjuI GAANNNNNNNTTGG 4 cut(s) 938, 970, 1177, 1209
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 9 cut(s) 328, 354, 575, 675, 709, 917, 995, 1036, 1079
AluI AGCT 9 cut(s) 328, 354, 575, 675, 709, 917, 995, 1036, 1079
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 777
Ama87I CYCGRG 1 cut(s) 501
AoxI GGCC 3 cut(s) 538, 762, 1067
ApeKI GCWGC 7 cut(s) 303, 306, 309, 917, 1033, 1052, 1055
ApoI RAATTY 2 cut(s) 1003, 1240
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
AspLEI GCGC 2 cut(s) 79, 88
AspS9I GGNCC 1 cut(s) 539
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 3 cut(s) 247, 423, 598
AvaI CYCGRG 1 cut(s) 501
BanI GGYRCC 1 cut(s) 1178
BarI GAAGNNNNNNTAC 2 cut(s) 680, 712
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 7 cut(s) 315, 318, 321, 904, 1039, 1042, 1045
BccI CCATC 5 cut(s) 166, 775, 797, 992, 1204
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 2 cut(s) 187, 766
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 1 cut(s) 302
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 1 cut(s) 102
BfrI CTTAAG 2 cut(s) 788, 1117
BglII AGATCT 2 cut(s) 148, 808
BisI GCNGC 8 cut(s) 304, 307, 310, 343, 918, 1034, 1053, 1056
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 8 cut(s) 305, 308, 311, 344, 919, 1035, 1054, 1057
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 3 cut(s) 187, 635, 766
BmeT110I CYCGRG 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 3 cut(s) 319, 541, 1180
BmrFI CCNGG 3 cut(s) 187, 635, 766
BmsI GCATC 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 98
BpmI CTGGAG 3 cut(s) 530, 841, 875
Bpu10I CCTNAGC 2 cut(s) 38, 882
Bpu1102I GCTNAGC 1 cut(s) 705
BpuMI CCSGG 1 cut(s) 635
BsaBI GATNNNNATC 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 765
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bse1I ACTGG 4 cut(s) 38, 513, 858, 936
Bse3DI GCAATG 1 cut(s) 319
Bse8I GATNNNNATC 1 cut(s) 807
BseBI CCWGG 2 cut(s) 187, 766
BseDI CCNNGG 1 cut(s) 765
BseGI GGATG 6 cut(s) 142, 745, 808, 877, 1215, 1219
BseJI GATNNNNATC 1 cut(s) 807
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 123, 313
BseNI ACTGG 4 cut(s) 38, 513, 858, 936
BseRI GAGGAG 4 cut(s) 296, 310, 454, 1188
BseXI GCAGC 7 cut(s) 315, 318, 321, 904, 1039, 1042, 1045
Bsh1285I CGRYCG 1 cut(s) 558
BshFI GGCC 3 cut(s) 540, 764, 1069
BshNI GGYRCC 1 cut(s) 1178
BsiEI CGRYCG 1 cut(s) 558
BsiHKCI CYCGRG 1 cut(s) 501
BsiSI CCGG 1 cut(s) 635
BslFI GGGAC 2 cut(s) 56, 366
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 2 cut(s) 56, 366
BsnI GGCC 3 cut(s) 540, 764, 1069
BsoBI CYCGRG 1 cut(s) 501
Bsp143I GATC 5 cut(s) 148, 333, 598, 769, 808
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 3 cut(s) 343, 418, 554
BspANI GGCC 3 cut(s) 540, 764, 1069
BspCNI CTCAG 2 cut(s) 124, 312
BspLI GGNNCC 3 cut(s) 319, 541, 1180
BspPI GGATC 1 cut(s) 777
BspT107I GGYRCC 1 cut(s) 1178
BspTI CTTAAG 2 cut(s) 788, 1117
BsrBI CCGCTC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 4 cut(s) 38, 513, 858, 936
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 5 cut(s) 148, 333, 598, 769, 808
BssNI GRCGYC 1 cut(s) 340
Bst2UI CCWGG 2 cut(s) 187, 766
Bst4CI ACNGT 4 cut(s) 193, 235, 260, 290
Bst6I CTCTTC 3 cut(s) 158, 429, 441
BstACI GRCGYC 1 cut(s) 340
BstAFI CTTAAG 2 cut(s) 788, 1117
BstC8I GCNNGC 3 cut(s) 568, 711, 1031
BstDEI CTNAG 8 cut(s) 38, 132, 299, 347, 705, 882, 1037, 1064
BstF5I GGATG 6 cut(s) 142, 745, 808, 877, 1215, 1219
BstHHI GCGC 2 cut(s) 79, 88
BstKTI GATC 5 cut(s) 151, 336, 601, 772, 811
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 5 cut(s) 148, 333, 598, 769, 808
BstMCI CGRYCG 1 cut(s) 558
BstNI CCWGG 2 cut(s) 187, 766
BstNSI RCATGY 1 cut(s) 1093
BstSCI CCNGG 3 cut(s) 185, 633, 764
BstV1I GCAGC 7 cut(s) 315, 318, 321, 904, 1039, 1042, 1045
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 2 cut(s) 148, 808
BstYI RGATCY 2 cut(s) 148, 808
BsuRI GGCC 3 cut(s) 540, 764, 1069
BtgZI GCGATG 1 cut(s) 1032
BtsCI GGATG 6 cut(s) 142, 745, 808, 877, 1215, 1219
BtsIMutI CAGTG 2 cut(s) 198, 1232
Cac8I GCNNGC 3 cut(s) 568, 711, 1031
CfoI GCGC 2 cut(s) 79, 88
Cfr13I GGNCC 1 cut(s) 539
CseI GACGC 1 cut(s) 348
Csp6I GTAC 6 cut(s) 164, 291, 498, 614, 793, 1219
CviAII CATG 3 cut(s) 96, 177, 1090
CviQI GTAC 6 cut(s) 164, 291, 498, 614, 793, 1219
DdeI CTNAG 8 cut(s) 38, 132, 299, 347, 705, 882, 1037, 1064
DpnI GATC 5 cut(s) 150, 335, 600, 771, 810
DpnII GATC 5 cut(s) 148, 333, 598, 769, 808
DrdI GACNNNNNNGTC 1 cut(s) 378
DseDI GACNNNNNNGTC 1 cut(s) 378
Eam1104I CTCTTC 3 cut(s) 158, 429, 441
EarI CTCTTC 3 cut(s) 158, 429, 441
Eco147I AGGCCT 1 cut(s) 1069
Eco57I CTGAAG 3 cut(s) 110, 463, 1170
Eco88I CYCGRG 1 cut(s) 501
EcoRI GAATTC 1 cut(s) 1003
EcoRII CCWGG 2 cut(s) 185, 764
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 3 cut(s) 99, 180, 1093
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FaqI GGGAC 2 cut(s) 56, 366
FatI CATG 3 cut(s) 95, 176, 1089
FauNDI CATATG 1 cut(s) 1165
Fnu4HI GCNGC 8 cut(s) 304, 307, 310, 343, 918, 1034, 1053, 1056
FokI GGATG 6 cut(s) 149, 752, 815, 884, 1222, 1226
Fsp4HI GCNGC 8 cut(s) 304, 307, 310, 343, 918, 1034, 1053, 1056
FspBI CTAG 1 cut(s) 102
GlaI GCGC 2 cut(s) 78, 87
GluI GCNGC 8 cut(s) 304, 307, 310, 343, 918, 1034, 1053, 1056
GsuI CTGGAG 3 cut(s) 530, 841, 875
HaeIII GGCC 3 cut(s) 540, 764, 1069
HapII CCGG 1 cut(s) 635
HgaI GACGC 1 cut(s) 348
HhaI GCGC 2 cut(s) 79, 88
Hin1I GRCGYC 1 cut(s) 340
Hin1II CATG 3 cut(s) 99, 180, 1093
Hin6I GCGC 2 cut(s) 77, 86
HinP1I GCGC 2 cut(s) 77, 86
HindIII AAGCTT 2 cut(s) 326, 707
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 635
HphI GGTGA 3 cut(s) 247, 423, 598
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 7 cut(s) 333, 338, 371, 606, 622, 1009, 1150
Hpy188III TCNNGA 3 cut(s) 216, 1236, 1245
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 3 cut(s) 375, 473, 819
HpyAV CCTTC 3 cut(s) 418, 469, 487
HpyCH4III ACNGT 4 cut(s) 193, 235, 260, 290
HpyCH4V TGCA 7 cut(s) 6, 176, 566, 713, 743, 920, 1093
HpyF3I CTNAG 8 cut(s) 38, 132, 299, 347, 705, 882, 1037, 1064
Hsp92I GRCGYC 1 cut(s) 340
Hsp92II CATG 3 cut(s) 99, 180, 1093
HspAI GCGC 2 cut(s) 77, 86
Kzo9I GATC 5 cut(s) 148, 333, 598, 769, 808
LmnI GCTCC 3 cut(s) 323, 680, 1076
Lsp1109I GCAGC 7 cut(s) 315, 318, 321, 904, 1039, 1042, 1045
LweI GCATC 1 cut(s) 730
MaeI CTAG 1 cut(s) 102
MaeIII GTNAC 2 cut(s) 849, 927
MalI GATC 5 cut(s) 150, 335, 600, 771, 810
MbiI CCGCTC 1 cut(s) 420
MboI GATC 5 cut(s) 148, 333, 598, 769, 808
MboII GAAGA 5 cut(s) 103, 145, 231, 416, 428
MflI RGATCY 2 cut(s) 148, 808
MluCI AATT 3 cut(s) 1003, 1023, 1240
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 3 cut(s) 251, 394, 645
MseI TTAA 4 cut(s) 789, 836, 1013, 1118
MspCI CTTAAG 2 cut(s) 788, 1117
MspI CCGG 1 cut(s) 635
MspR9I CCNGG 3 cut(s) 187, 635, 766
MvaI CCWGG 2 cut(s) 187, 766
NciI CCSGG 1 cut(s) 635
NdeI CATATG 1 cut(s) 1165
NdeII GATC 5 cut(s) 148, 333, 598, 769, 808
NlaIII CATG 3 cut(s) 99, 180, 1093
NlaIV GGNNCC 3 cut(s) 319, 541, 1180
NspI RCATGY 1 cut(s) 1093
PaeR7I CTCGAG 1 cut(s) 501
PceI AGGCCT 1 cut(s) 1069
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PkrI GCNGC 8 cut(s) 305, 308, 311, 344, 919, 1035, 1054, 1057
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 1205
Psp6I CCWGG 2 cut(s) 185, 764
PspGI CCWGG 2 cut(s) 185, 764
PspN4I GGNNCC 3 cut(s) 319, 541, 1180
PspPI GGNCC 1 cut(s) 539
PspXI VCTCGAGB 1 cut(s) 501
PsuI RGATCY 2 cut(s) 148, 808
RsaI GTAC 6 cut(s) 165, 292, 499, 615, 794, 1220
RsaNI GTAC 6 cut(s) 164, 291, 498, 614, 793, 1219
SaqAI TTAA 4 cut(s) 789, 836, 1013, 1118
SatI GCNGC 8 cut(s) 304, 307, 310, 343, 918, 1034, 1053, 1056
Sau3AI GATC 5 cut(s) 148, 333, 598, 769, 808
Sau96I GGNCC 1 cut(s) 539
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 3 cut(s) 187, 635, 766
SfaNI GCATC 1 cut(s) 730
Sfr274I CTCGAG 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 501
SmlI CTYRAG 3 cut(s) 501, 788, 1117
SmoI CTYRAG 3 cut(s) 501, 788, 1117
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 3 cut(s) 1003, 1023, 1240
SseBI AGGCCT 1 cut(s) 1069
SsiI CCGC 3 cut(s) 343, 418, 554
SspI AATATT 1 cut(s) 840
SspMI CTAG 1 cut(s) 102
StuI AGGCCT 1 cut(s) 1069
StyD4I CCNGG 3 cut(s) 185, 633, 764
TaaI ACNGT 4 cut(s) 193, 235, 260, 290
TaqI TCGA 9 cut(s) 110, 323, 471, 486, 502, 558, 597, 652, 907
TasI AATT 3 cut(s) 1003, 1023, 1240
TatI WGTACW 5 cut(s) 163, 497, 613, 792, 1218
TauI GCSGC 1 cut(s) 345
Tru1I TTAA 4 cut(s) 789, 836, 1013, 1118
Tru9I TTAA 4 cut(s) 789, 836, 1013, 1118
TscAI CASTG 2 cut(s) 198, 1232
TseI GCWGC 7 cut(s) 303, 306, 309, 917, 1033, 1052, 1055
TspDTI ATGAA 2 cut(s) 32, 1035
TspGWI ACGGA 3 cut(s) 457, 803, 1111
TspRI CASTG 2 cut(s) 198, 1232
Vha464I CTTAAG 2 cut(s) 788, 1117
XapI RAATTY 2 cut(s) 1003, 1240
XceI RCATGY 1 cut(s) 1093
XcmI CCANNNNNNNNNTGG 1 cut(s) 772
XhoI CTCGAG 1 cut(s) 501
XspI CTAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.