Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000403

Physical Location & Seq

Genomic Coordinates Forward (+)

28229586 .. 28231928

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0267500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2343 bp

ATGGCTTTTATAGTTTGTTATCTTCTTGCCTTTGCATTCTTCAATTATGCTGAAGCACAACAACTGCAGTCTAATATAAGCAGGGGATCTGCTTTAACACCCACTACCAACTCCTCATGGTTGTCTCGTTCCGGTATGTATGCCTTTGGCTTTTACAAGCAAGGCAATGGCTTTGCTGTGGGGATAGTTGTTGCTGCAGTCCCCCAAAAGACTGTGGTGTGGACTGCAGATCGAGATGGTGGACTAGTCTCAGACAATGCCACCTTGTTCTTCACAAGTGATGGGATTGCCTTGCAGTCGACAGAAGGCGGGCGAAGTTTGGTGGTTGAGTCTCCAATGCCTATTTCTTCTGCTTCGATGCTTGATTCGGGTAATTTTGTGCTGTACAATGCGAGTCGGGCAATAGTATGGCAAAGCTTCCAGTACCCAACTGATACCTTGTTGCCCACTCAACCACTGCTAGCAGGGAAGGAACTTCTGTCTGCTAAATCAGAAACTAATCACTCATCAGGCATTTTCCGTCTCGCTATGCAAGGTGATGGAAACCTTGTCCAGTACCCTGTTGACACTGGACCAGATGGTGGTGTTCAATATGCGTACTATACATCTAACACAGATAGAGCAGGAACAAATGTGTCCCTTAATTTAGGTGTTGATGGTCGTCTCTACTTGCTCAATGATACTGGTGGAAATTTATTGAATCTCGCCGATGGAGGTCTTCCCACTCGAGGAAAATCTTATCTTATGAGAATTGATGCAGATGGGATTTTTCGTCTGTATTCATATGATCTGAAACAGAAAGGAAATTGGTCCACTGAATGGTCATCTTCAACGGATAGATGTAACCCTAAAGGTATATGCGGAATTAATAGCTATTGTGTCACAATGGGGGCAGCAATTGAGTGTAGATGTCTTCCTGGATTCGAATATGTCAACCCGGGAGATCAGGCTTCAGGTTGTGAGAGAAATTCTTCTGTTGGAGATGTTTGCAAATCAAAGAACTGGAATTGCAACTACACCATGCAAGAACTGGACAGCACCGCATGGGAGGATGAGCCATATATGGCTCTGTCATCTCCAGGTAAAGAAGATTGCAAACAGGCCTGTCTGGAGGATTTGAACTGTCAGGCTGCAGTTTTTGACGGTTCAAGCTGCAGAAAGCAGAGGCTTCCTTTGAGATATGGAAGAAGAGCAGATACTTCGAACATAGTTCTCCTGAAGAAGGTTGTCATGATTTCTGCAGCTCCAGCTCCGGATGCAGTTGTTCCAAAAGGAAGCAGGAAAAATGGTAGAATTGCATTCTTGATTATTGGCGTGTCGTTTACTGCTCTGGGGTCCATTCTGTTGGTGATTTCTGTAATTGTATTATGGAAACACAATGTCTGGGCATATAAAAGAATGAATGAGCTCAATGGTGATGCTGAGTGGAATGAGGATGTAGCTCCGCGACCATATGCTTACGAAGAGCTAGAAAAGATGACTAATAATTTCCATGAAGAGGTTGGTAGAGGAACCTCAGGAACAGTTTACAAAGGGGTGATTGAAAATAGCCAAAAGCTAGTTGCTGTCAAGAGACTTGAGAAAGTTGCAGCTGAAGGCGACAAAGAATTTCAGACTGAAATGAGAATTATTGGCAGAACCCATCACCGGAATTTAGTCCGTTTACTTGGGTACTGTCTTGATGGACCAAAGAGGCTTTTGGTGTATGAGTACATGAGCAATGGTTCACTTGCGGATATACTCTTCACACCTGAGAGGAGACCTTATTGGGAAGAAAGAATGGGAATTGCACGCAACATAGCACGAGGGTTTCTTTATCTCCATGAAGAGTGTGATACACAGATCATTCACTGCGACATAAAACCTCAAAACATACTGATGGATGAGTACATGTGCCCAAAAATCTCTGACTTCGGATTGGCCAAGTCGCTTCAGCCAGAGCAGACTAGAACCACTACCGGCATTAGGGGGACTAAAGGGTATGTTGCGCCTGAGTGGCATAGGAAAATGCCTGTAACAGTTAAAGCAGATGTTTACAGCTTTGGAATTGTGCTGTTGGAGATTTTATGCTGTCGAAGGAATGTGGACTGGAGTCTTCCTCATGATGAAGCTATCTTGGATGAATTAGTCTACCATTATTTTGAGAGTGGTGAGCTCACGAAATTGGTTGGGGATGAAAACATAGACAGAAGGCAATTGGAAAGGGTGGTTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCGTCGCTCCGTCCTTCTATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGAAATCCCAGTTCCTCCTGGTCCAAATTCATTTCTCAGTACCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0000746 GO:0000747 GO:0000920 GO:0000935 GO:0000936 GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005937 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006076 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0009986 GO:0009987 GO:0010383 GO:0015629 GO:0015926 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016998 GO:0019953 GO:0022411 GO:0022414 GO:0030246 GO:0030247 GO:0030427 GO:0030428 GO:0030994 GO:0031505 GO:0032153 GO:0032155 GO:0042973 GO:0042995 GO:0043170 GO:0043187 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043332 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044277 GO:0044347 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044457 GO:0044463 GO:0044464 GO:0044703 GO:0044764 GO:0045229 GO:0051273 GO:0051275 GO:0051286 GO:0051301 GO:0051704 GO:0070871 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071852 GO:0071853 GO:0120025 GO:0120038 GO:1901575 GO:1904541 GO:1990819

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_81

Protein Analysis

780

Amino Acids

86.66

Weight (kDa)

5.86

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	71 - 154	1.5e-13	D-mannose binding lectin
S_locus_glycop	PF00954	249 - 309	1.5e-06	S-locus glycoprotein domain
Pkinase	PF00069	497 - 758	1.5e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	497 - 758	1.3e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000403)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18310 AT5G15870
fragaria_vesca	FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica	MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica	Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis	pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis	RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata	RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora	Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha	Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana	Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	581, 819
AccI	GTMKAC	2 cut(s)	299, 2130
AccII	CGCG	1 cut(s)	1447
AccIII	TCCGGA	1 cut(s)	1252
AciI	CCGC	5 cut(s)	309, 861, 1041, 1445, 1733
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	1920
AcsI	RAATTY	5 cut(s)	691, 967, 1607, 1651, 2320
AcuI	CTGAAG	5 cut(s)	72, 936, 1238, 1614, 1916
AfaI	GTAC	8 cut(s)	386, 425, 557, 599, 1673, 1712, 1889, 2335
AfiI	CCNNNNNNNGG	7 cut(s)	581, 728, 819, 1222, 1498, 1647, 1965
AflIII	ACRYGT	1 cut(s)	1890
AgsI	TTSAA	7 cut(s)	43, 590, 700, 831, 1120, 1149, 1544
AhlI	ACTAGT	1 cut(s)	244
AjnI	CCWGG	4 cut(s)	916, 1078, 2232, 2311
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
Alw21I	GWGCWC	2 cut(s)	1410, 2157
Alw26I	GTCTC	7 cut(s)	129, 253, 336, 527, 668, 1567, 1753
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	2 cut(s)	726, 937
Aor13HI	TCCGGA	1 cut(s)	1252
AoxI	GGCC	2 cut(s)	1101, 1920
ApeKI	GCWGC	6 cut(s)	194, 893, 1130, 1152, 1241, 1589
ApoI	RAATTY	5 cut(s)	691, 967, 1607, 1651, 2320
AseI	ATTAAT	1 cut(s)	867
Asp700I	GAANNNNTTC	1 cut(s)	970
AspLEI	GCGC	1 cut(s)	1990
AspS9I	GGNCC	5 cut(s)	572, 810, 1335, 1685, 2315
AsuC2I	CCSGG	2 cut(s)	938, 939
AsuHPI	GGTGA	6 cut(s)	548, 1360, 1427, 1549, 1637, 2162
AsuII	TTCGAA	2 cut(s)	924, 1202
AsuNHI	GCTAGC	1 cut(s)	460
AvaI	CYCGRG	2 cut(s)	726, 937
AvaII	GGWCC	5 cut(s)	572, 810, 1335, 1685, 2315
AxyI	CCTNAGG	1 cut(s)	1516
BaeGI	GKGCMC	1 cut(s)	1898
BalI	TGGCCA	1 cut(s)	1922
BanII	GRGCYC	2 cut(s)	1410, 2157
BarI	GAAGNNNNNNTAC	2 cut(s)	1180, 1212
BauI	CACGAG	1 cut(s)	1803
BbsI	GAAGAC	3 cut(s)	710, 905, 2087
Bbv12I	GWGCWC	2 cut(s)	1410, 2157
BbvI	GCAGC	6 cut(s)	181, 905, 1117, 1139, 1253, 1601
BceAI	ACGGC	1 cut(s)	2227
BcgI	CGANNNNNNTGC	2 cut(s)	1182, 1216
BciT130I	CCWGG	4 cut(s)	918, 1080, 2234, 2313
BcnI	CCSGG	2 cut(s)	938, 939
BcoDI	GTCTC	7 cut(s)	129, 253, 336, 527, 668, 1567, 1753
BcuI	ACTAGT	1 cut(s)	244
BfaI	CTAG	6 cut(s)	245, 461, 1469, 1559, 1947, 2341
BfmI	CTRYAG	7 cut(s)	65, 195, 225, 1131, 1153, 1239, 2292
BglI	GCCNNNNNGGC	1 cut(s)	1996
BisI	GCNGC	6 cut(s)	195, 894, 1131, 1153, 1242, 1590
BlsI	GCNGC	6 cut(s)	196, 895, 1132, 1154, 1243, 1591
Bme1390I	CCNGG	6 cut(s)	918, 938, 939, 1080, 2234, 2313
Bme18I	GGWCC	5 cut(s)	572, 810, 1335, 1685, 2315
BmeT110I	CYCGRG	2 cut(s)	726, 937
BmgT120I	GGNCC	5 cut(s)	572, 810, 1335, 1685, 2315
BmiI	GGNNCC	2 cut(s)	1336, 1513
BmrFI	CCNGG	6 cut(s)	918, 938, 939, 1080, 2234, 2313
BmrI	ACTGGG	1 cut(s)	2297
BmsI	GCATC	5 cut(s)	348, 745, 1246, 1408, 2238
BmtI	GCTAGC	1 cut(s)	464
BmuI	ACTGGG	1 cut(s)	2297
BoxI	GACNNNNGTC	1 cut(s)	2091
BpiI	GAAGAC	3 cut(s)	710, 905, 2087
BplI	GAGNNNNNCTC	2 cut(s)	2083, 2115
BpmI	CTGGAG	4 cut(s)	1062, 1130, 1230, 2110
Bpu14I	TTCGAA	2 cut(s)	924, 1202
BpuEI	CTTGAG	1 cut(s)	1598
BpuMI	CCSGG	2 cut(s)	938, 939
BsaI	GGTCTC	1 cut(s)	1753
BsaJI	CCNNGG	1 cut(s)	937
BsaWI	WCCGGW	3 cut(s)	131, 1252, 1647
Bsc4I	CCNNNNNNNGG	7 cut(s)	581, 728, 819, 1222, 1498, 1647, 1965
Bse118I	RCCGGY	1 cut(s)	1958
Bse1I	ACTGG	8 cut(s)	421, 553, 574, 688, 1007, 1035, 2093, 2303
Bse21I	CCTNAGG	1 cut(s)	1516
Bse3DI	GCAATG	2 cut(s)	172, 1726
BseAI	TCCGGA	1 cut(s)	1252
BseBI	CCWGG	4 cut(s)	918, 1080, 2234, 2313
BseDI	CCNNGG	1 cut(s)	937
BseGI	GGATG	8 cut(s)	1057, 1261, 1441, 1888, 2125, 2179, 2229, 2242
BseLI	CCNNNNNNNGG	7 cut(s)	581, 728, 819, 1222, 1498, 1647, 1965
BseMI	GCAATG	2 cut(s)	172, 1726
BseMII	CTCAG	5 cut(s)	264, 1413, 1530, 1743, 1983
BseNI	ACTGG	8 cut(s)	421, 553, 574, 688, 1007, 1035, 2093, 2303
BseRI	GAGGAG	2 cut(s)	103, 1771
BseSI	GKGCMC	1 cut(s)	1898
BseXI	GCAGC	6 cut(s)	181, 905, 1117, 1139, 1253, 1601
Bsh1236I	CGCG	1 cut(s)	1447
BshFI	GGCC	2 cut(s)	1103, 1922
BsiHKAI	GWGCWC	2 cut(s)	1410, 2157
BsiHKCI	CYCGRG	2 cut(s)	726, 937
BsiSI	CCGG	5 cut(s)	132, 938, 1253, 1648, 1959
BslFI	GGGAC	5 cut(s)	185, 622, 1984, 2232, 2302
BslI	CCNNNNNNNGG	7 cut(s)	581, 728, 819, 1222, 1498, 1647, 1965
BsmAI	GTCTC	7 cut(s)	129, 253, 336, 527, 668, 1567, 1753
BsmBI	CGTCTC	2 cut(s)	527, 668
BsmFI	GGGAC	5 cut(s)	185, 622, 1984, 2232, 2302
BsmI	GAATGC	2 cut(s)	35, 1298
BsnI	GGCC	2 cut(s)	1103, 1922
Bso31I	GGTCTC	1 cut(s)	1753
BsoBI	CYCGRG	2 cut(s)	726, 937
Bsp119I	TTCGAA	2 cut(s)	924, 1202
Bsp1286I	GDGCHC	3 cut(s)	1410, 1898, 2157
Bsp13I	TCCGGA	1 cut(s)	1252
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	5 cut(s)	86, 229, 787, 943, 1842
BspACI	CCGC	5 cut(s)	309, 861, 1041, 1445, 1733
BspANI	GGCC	2 cut(s)	1103, 1922
BspCNI	CTCAG	6 cut(s)	263, 1414, 1529, 1744, 1984, 2343
BspEI	TCCGGA	1 cut(s)	1252
BspFNI	CGCG	1 cut(s)	1447
BspHI	TCATGA	2 cut(s)	1230, 2101
BspLI	GGNNCC	2 cut(s)	1336, 1513
BspMAI	CTGCAG	6 cut(s)	69, 199, 229, 1135, 1157, 1243
BspOI	GCTAGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	94
BspQI	GCTCTTC	2 cut(s)	1183, 1458
BspT104I	TTCGAA	2 cut(s)	924, 1202
BspTNI	GGTCTC	1 cut(s)	1753
BsrDI	GCAATG	2 cut(s)	172, 1726
BsrFI	RCCGGY	1 cut(s)	1958
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	8 cut(s)	421, 553, 574, 688, 1007, 1035, 2093, 2303
BssAI	RCCGGY	1 cut(s)	1958
BssECI	CCNNGG	1 cut(s)	937
BssMI	GATC	5 cut(s)	86, 229, 787, 943, 1842
BssSI	CACGAG	1 cut(s)	1803
Bst2BI	CACGAG	1 cut(s)	1803
Bst2UI	CCWGG	4 cut(s)	918, 1080, 2234, 2313
Bst4CI	ACNGT	7 cut(s)	214, 1124, 1145, 1525, 1676, 2020, 2293
Bst6I	CTCTTC	5 cut(s)	1183, 1458, 1491, 1748, 1821
BstAUI	TGTACA	1 cut(s)	384
BstBI	TTCGAA	2 cut(s)	924, 1202
BstC8I	GCNNGC	3 cut(s)	311, 462, 1792
BstDEI	CTNAG	6 cut(s)	250, 1422, 1516, 1752, 1992, 2330
BstENI	CCTNNNNNAGG	1 cut(s)	1220
BstF5I	GGATG	8 cut(s)	1057, 1261, 1441, 1888, 2125, 2179, 2229, 2242
BstFNI	CGCG	1 cut(s)	1447
BstHHI	GCGC	1 cut(s)	1990
BstKTI	GATC	5 cut(s)	89, 232, 790, 946, 1845
BstMAI	GTCTC	7 cut(s)	129, 253, 336, 527, 668, 1567, 1753
BstMBI	GATC	5 cut(s)	86, 229, 787, 943, 1842
BstMWI	GCNNNNNNNGC	4 cut(s)	398, 1247, 1256, 1996
BstNI	CCWGG	4 cut(s)	918, 1080, 2234, 2313
BstNSI	RCATGY	1 cut(s)	1894
BstPAI	GACNNNNGTC	1 cut(s)	2091
BstSCI	CCNGG	6 cut(s)	916, 936, 937, 1078, 2232, 2311
BstSFI	CTRYAG	7 cut(s)	65, 195, 225, 1131, 1153, 1239, 2292
BstSLI	GKGCMC	1 cut(s)	1898
BstUI	CGCG	1 cut(s)	1447
BstV1I	GCAGC	6 cut(s)	181, 905, 1117, 1139, 1253, 1601
BstV2I	GAAGAC	3 cut(s)	710, 905, 2087
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	1345
BstYI	RGATCY	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	1516
BsuRI	GGCC	2 cut(s)	1103, 1922
BtsCI	GGATG	8 cut(s)	1057, 1261, 1441, 1888, 2125, 2179, 2229, 2242
BtsI	GCAGTG	2 cut(s)	455, 1849
BtsIMutI	CAGTG	4 cut(s)	455, 567, 813, 1849
Cac8I	GCNNGC	3 cut(s)	311, 462, 1792
CciI	TCATGA	2 cut(s)	1230, 2101
CfoI	GCGC	1 cut(s)	1990
Cfr10I	RCCGGY	1 cut(s)	1958
Cfr13I	GGNCC	5 cut(s)	572, 810, 1335, 1685, 2315
Cfr9I	CCCGGG	1 cut(s)	937
Csp6I	GTAC	8 cut(s)	385, 424, 556, 598, 1672, 1711, 1888, 2334
CviAII	CATG	9 cut(s)	117, 1021, 1044, 1231, 1493, 1714, 1823, 1891, 2102
CviQI	GTAC	8 cut(s)	385, 424, 556, 598, 1672, 1711, 1888, 2334
DdeI	CTNAG	6 cut(s)	250, 1422, 1516, 1752, 1992, 2330
DpnI	GATC	5 cut(s)	88, 231, 789, 945, 1844
DpnII	GATC	5 cut(s)	86, 229, 787, 943, 1842
EaeI	YGGCCR	1 cut(s)	1920
Eam1104I	CTCTTC	5 cut(s)	1183, 1458, 1491, 1748, 1821
EarI	CTCTTC	5 cut(s)	1183, 1458, 1491, 1748, 1821
Ecl136II	GAGCTC	2 cut(s)	1408, 2155
Eco147I	AGGCCT	1 cut(s)	1103
Eco24I	GRGCYC	2 cut(s)	1410, 2157
Eco31I	GGTCTC	1 cut(s)	1753
Eco47I	GGWCC	5 cut(s)	572, 810, 1335, 1685, 2315
Eco53kI	GAGCTC	2 cut(s)	1408, 2155
Eco57I	CTGAAG	5 cut(s)	72, 936, 1238, 1614, 1916
Eco81I	CCTNAGG	1 cut(s)	1516
Eco88I	CYCGRG	2 cut(s)	726, 937
EcoICRI	GAGCTC	2 cut(s)	1408, 2155
EcoNI	CCTNNNNNAGG	1 cut(s)	1220
EcoRII	CCWGG	4 cut(s)	916, 1078, 2232, 2311
EcoT38I	GRGCYC	2 cut(s)	1410, 2157
Esp3I	CGTCTC	2 cut(s)	527, 668
FaeI	CATG	9 cut(s)	120, 1024, 1047, 1234, 1496, 1717, 1826, 1894, 2105
FalI	AAGNNNNNCTT	2 cut(s)	2205, 2237
FaqI	GGGAC	5 cut(s)	185, 622, 1984, 2232, 2302
FatI	CATG	9 cut(s)	116, 1020, 1043, 1230, 1492, 1713, 1822, 1890, 2101
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	2 cut(s)	784, 1453
FblI	GTMKAC	2 cut(s)	299, 2130
Fnu4HI	GCNGC	6 cut(s)	195, 894, 1131, 1153, 1242, 1590
FokI	GGATG	8 cut(s)	1064, 1268, 1448, 1895, 2132, 2186, 2216, 2249
FriOI	GRGCYC	2 cut(s)	1410, 2157
Fsp4HI	GCNGC	6 cut(s)	195, 894, 1131, 1153, 1242, 1590
FspBI	CTAG	6 cut(s)	245, 461, 1469, 1559, 1947, 2341
GlaI	GCGC	1 cut(s)	1989
GluI	GCNGC	6 cut(s)	195, 894, 1131, 1153, 1242, 1590
GsuI	CTGGAG	4 cut(s)	1062, 1130, 1230, 2110
HaeIII	GGCC	2 cut(s)	1103, 1922
HapII	CCGG	5 cut(s)	132, 938, 1253, 1648, 1959
HhaI	GCGC	1 cut(s)	1990
Hin1II	CATG	9 cut(s)	120, 1024, 1047, 1234, 1496, 1717, 1826, 1894, 2105
Hin6I	GCGC	1 cut(s)	1988
HinP1I	GCGC	1 cut(s)	1988
HincII	GTYRAC	3 cut(s)	300, 565, 934
HindII	GTYRAC	3 cut(s)	300, 565, 934
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	6 cut(s)	329, 365, 394, 700, 921, 2092
HpaII	CCGG	5 cut(s)	132, 938, 1253, 1648, 1959
HphI	GGTGA	6 cut(s)	548, 1360, 1427, 1549, 1637, 2162
Hpy188I	TCNGA	6 cut(s)	253, 493, 792, 1614, 1909, 1916
Hpy99I	CGWCG	1 cut(s)	2248
HpyAV	CCTTC	9 cut(s)	299, 463, 1216, 1589, 2070, 2184, 2260, 2265, 2279
HpyCH4III	ACNGT	7 cut(s)	214, 1124, 1145, 1525, 1676, 2020, 2293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	398, 1247, 1256, 1996
HpyF3I	CTNAG	6 cut(s)	250, 1422, 1516, 1752, 1992, 2330
Hsp92II	CATG	9 cut(s)	120, 1024, 1047, 1234, 1496, 1717, 1826, 1894, 2105
HspAI	GCGC	1 cut(s)	1988
Kpn2I	TCCGGA	1 cut(s)	1252
Kzo9I	GATC	5 cut(s)	86, 229, 787, 943, 1842
LguI	GCTCTTC	2 cut(s)	1183, 1458
LmnI	GCTCC	4 cut(s)	1249, 1255, 1447, 2253
Lsp1109I	GCAGC	6 cut(s)	181, 905, 1117, 1139, 1253, 1601
LweI	GCATC	5 cut(s)	348, 745, 1246, 1408, 2238
MaeI	CTAG	6 cut(s)	245, 461, 1469, 1559, 1947, 2341
MaeIII	GTNAC	3 cut(s)	842, 880, 2014
MalI	GATC	5 cut(s)	88, 231, 789, 945, 1844
MboI	GATC	5 cut(s)	86, 229, 787, 943, 1842
MfeI	CAATTG	2 cut(s)	897, 2195
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	3 cut(s)	1410, 1898, 2157
MlsI	TGGCCA	1 cut(s)	1922
MluNI	TGGCCA	1 cut(s)	1922
MlyI	GAGTC	3 cut(s)	338, 403, 2101
MmeI	TCCRAC	3 cut(s)	958, 2037, 2262
Mox20I	TGGCCA	1 cut(s)	1922
MroI	TCCGGA	1 cut(s)	1252
MroXI	GAANNNNTTC	1 cut(s)	970
MscI	TGGCCA	1 cut(s)	1922
MseI	TTAA	5 cut(s)	95, 642, 867, 2022, 2211
MslI	CAYNNNNRTG	1 cut(s)	1877
Msp20I	TGGCCA	1 cut(s)	1922
MspA1I	CMGCKG	1 cut(s)	1592
MspI	CCGG	5 cut(s)	132, 938, 1253, 1648, 1959
MspR9I	CCNGG	6 cut(s)	918, 938, 939, 1080, 2234, 2313
MunI	CAATTG	2 cut(s)	897, 2195
Mva1269I	GAATGC	2 cut(s)	35, 1298
MvaI	CCWGG	4 cut(s)	918, 1080, 2234, 2313
MvnI	CGCG	1 cut(s)	1447
MwoI	GCNNNNNNNGC	4 cut(s)	398, 1247, 1256, 1996
NciI	CCSGG	2 cut(s)	938, 939
NdeI	CATATG	2 cut(s)	784, 1453
NdeII	GATC	5 cut(s)	86, 229, 787, 943, 1842
NheI	GCTAGC	1 cut(s)	460
NlaIII	CATG	9 cut(s)	120, 1024, 1047, 1234, 1496, 1717, 1826, 1894, 2105
NlaIV	GGNNCC	2 cut(s)	1336, 1513
NmuCI	GTSAC	1 cut(s)	880
NspI	RCATGY	1 cut(s)	1894
NspV	TTCGAA	2 cut(s)	924, 1202
PaeR7I	CTCGAG	1 cut(s)	726
PagI	TCATGA	2 cut(s)	1230, 2101
PceI	AGGCCT	1 cut(s)	1103
PciI	ACATGT	1 cut(s)	1890
PciSI	GCTCTTC	2 cut(s)	1183, 1458
PctI	GAATGC	2 cut(s)	35, 1298
PdmI	GAANNNNTTC	1 cut(s)	970
PfeI	GAWTC	3 cut(s)	365, 700, 921
PflMI	CCANNNNNTGG	2 cut(s)	581, 819
PfoI	TCCNGGA	2 cut(s)	916, 2232
PkrI	GCNGC	6 cut(s)	196, 895, 1132, 1154, 1243, 1591
PleI	GAGTC	3 cut(s)	337, 402, 2100
PpsI	GAGTC	3 cut(s)	337, 402, 2100
PscI	ACATGT	1 cut(s)	1890
PshAI	GACNNNNGTC	1 cut(s)	2091
PshBI	ATTAAT	1 cut(s)	867
Psp124BI	GAGCTC	2 cut(s)	1410, 2157
Psp6I	CCWGG	4 cut(s)	916, 1078, 2232, 2311
PspGI	CCWGG	4 cut(s)	916, 1078, 2232, 2311
PspN4I	GGNNCC	2 cut(s)	1336, 1513
PspPI	GGNCC	5 cut(s)	572, 810, 1335, 1685, 2315
PspXI	VCTCGAGB	1 cut(s)	726
PstI	CTGCAG	6 cut(s)	69, 199, 229, 1135, 1157, 1243
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	1592
RsaI	GTAC	8 cut(s)	386, 425, 557, 599, 1673, 1712, 1889, 2335
RsaNI	GTAC	8 cut(s)	385, 424, 556, 598, 1672, 1711, 1888, 2334
RseI	CAYNNNNRTG	1 cut(s)	1877
SacI	GAGCTC	2 cut(s)	1410, 2157
SalI	GTCGAC	1 cut(s)	298
SapI	GCTCTTC	2 cut(s)	1183, 1458
SaqAI	TTAA	5 cut(s)	95, 642, 867, 2022, 2211
SatI	GCNGC	6 cut(s)	195, 894, 1131, 1153, 1242, 1590
Sau3AI	GATC	5 cut(s)	86, 229, 787, 943, 1842
Sau96I	GGNCC	5 cut(s)	572, 810, 1335, 1685, 2315
SchI	GAGTC	3 cut(s)	338, 403, 2101
ScrFI	CCNGG	6 cut(s)	918, 938, 939, 1080, 2234, 2313
SduI	GDGCHC	3 cut(s)	1410, 1898, 2157
SfaNI	GCATC	5 cut(s)	348, 745, 1246, 1408, 2238
SfcI	CTRYAG	7 cut(s)	65, 195, 225, 1131, 1153, 1239, 2292
Sfr274I	CTCGAG	1 cut(s)	726
SfuI	TTCGAA	2 cut(s)	924, 1202
SinI	GGWCC	5 cut(s)	572, 810, 1335, 1685, 2315
SlaI	CTCGAG	1 cut(s)	726
SmaI	CCCGGG	1 cut(s)	939
SmiMI	CAYNNNNRTG	1 cut(s)	1877
SmlI	CTYRAG	2 cut(s)	726, 1577
SmoI	CTYRAG	2 cut(s)	726, 1577
SpeI	ACTAGT	1 cut(s)	244
SseBI	AGGCCT	1 cut(s)	1103
SsiI	CCGC	5 cut(s)	309, 861, 1041, 1445, 1733
SspMI	CTAG	6 cut(s)	245, 461, 1469, 1559, 1947, 2341
SstI	GAGCTC	2 cut(s)	1410, 2157
StuI	AGGCCT	1 cut(s)	1103
StyD4I	CCNGG	6 cut(s)	916, 936, 937, 1078, 2232, 2311
TaaI	ACNGT	7 cut(s)	214, 1124, 1145, 1525, 1676, 2020, 2293
TaqI	TCGA	7 cut(s)	232, 299, 356, 727, 924, 1202, 2074
TatI	WGTACW	3 cut(s)	384, 1710, 1887
TfiI	GAWTC	3 cut(s)	365, 700, 921
Tru1I	TTAA	5 cut(s)	95, 642, 867, 2022, 2211
Tru9I	TTAA	5 cut(s)	95, 642, 867, 2022, 2211
TscAI	CASTG	4 cut(s)	462, 574, 820, 1856
TseFI	GTSAC	1 cut(s)	880
TseI	GCWGC	6 cut(s)	194, 893, 1130, 1152, 1241, 1589
Tsp45I	GTSAC	1 cut(s)	880
TspDTI	ATGAA	9 cut(s)	771, 1415, 1509, 1839, 2121, 2136, 2190, 2276, 2313
TspGWI	ACGGA	4 cut(s)	509, 848, 1649, 2240
TspMI	CCCGGG	1 cut(s)	937
TspRI	CASTG	4 cut(s)	462, 574, 820, 1856
Van91I	CCANNNNNTGG	2 cut(s)	581, 819
VpaK11BI	GGWCC	5 cut(s)	572, 810, 1335, 1685, 2315
VspI	ATTAAT	1 cut(s)	867
XagI	CCTNNNNNAGG	1 cut(s)	1220
XapI	RAATTY	5 cut(s)	691, 967, 1607, 1651, 2320
XceI	RCATGY	1 cut(s)	1894
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1027, 1499
XhoI	CTCGAG	1 cut(s)	726
XmaI	CCCGGG	1 cut(s)	937
XmiI	GTMKAC	2 cut(s)	299, 2130
XmnI	GAANNNNTTC	1 cut(s)	970
XspI	CTAG	6 cut(s)	245, 461, 1469, 1559, 1947, 2341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.