Rorug02G0266000

Glycosyl hydrolase family 81 protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
28124582 .. 28124905
324 bp
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UTR
Exon/CDS
Intron
Rorug02G0266000.1

Sequence Viewer

Length: 324 bp
ATGGATAGGCCGATCTACCTAGAGTTTATGGTCCGTGAGGATGAGCAGGTTCGGAATCGGTGGTATGTGATTGAGGAGAGAGGTGGTGAAGAAGAAACAGCAGCAGATGAGTTGGAGGGCTGGGTCCGTAAAAGTGAAACAGATAGAGTCAGACAATTGCATCTTCCCCATTTAGATTATGAACTCCAGTTTAACAGTCTCGCCGTCGCTGAATCCCGTTTATTCCTCATCGGTGGCTATTTTCAACCTTACGACACATCTGATCCCGAACTATTTAGCAGAAGTGAAGGCGTGAAGCCGTCGGATTTCACTACATTGACTTGA

Protein Analysis

107

Amino Acids

12.65

Weight (kDa)

4.52

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000403)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18310 AT5G15870
fragaria_vesca FvH4_3g44967 FvH4_6g45580 FvH4_6g47860 FvH4_6g47870 FvH4_6g53160
malus_domestica MD09G1047100.v1.1 MD09G1081400.v1.1 MD09G1081500.v1.1 MD09G1081600.v1.1 MD09G1081700.v1.1 MD15G1128600.v1.1 MD17G1047200.v1.1 MD17G1048700.v1.1 MD17G1071200.v1.1 MD17G1072700.v1.1
prunus_persica Prupe.3G242000_v2.0.a1 Prupe.3G242100_v2.0.a1 Prupe.3G261700_v2.0.a1 Prupe.8G191700_v2.0.a1 Prupe.8G194600_v2.0.a1 Prupe.8G259500_v2.0.a1
pyrus_communis pycom09g00810 pycom09g00820 pycom09g00830 pycom15g11570 pycom17g04350 pycom17g07070 pycom17g07350
rosa_chinensis RchiOBHm_Chr1g0366281 RchiOBHm_Chr2g0163531 RchiOBHm_Chr2g0163581 RchiOBHm_Chr2g0167061 RchiOBHm_Chr2g0167071 RchiOBHm_Chr3g0490821 RchiOBHm_Chr3g0490841 RchiOBHm_Chr3g0492161 RchiOBHm_Chr3g0492171
rosa_laevigata RLG00000021408 RLG00000021693 RLG00000021694 RLG00000022819 RLG00000022827
rosa_multiflora Rmu_co8304887.1_g000001 Rmu_co8334235.1_g000001 Rmu_co8488335.1_g000001 Rmu_sc0003484.1_g000001 Rmu_sc0003484.1_g000004 Rmu_sc0010966.1_g000013 Rmu_sc0012462.1_g000001 Rmu_sc0019504.1_g000002 Rmu_sc0019504.1_g000004 Rmu_sc0022540.1_g000001 Rmu_sc0023760.1_g000001 Rmu_sc0038280.1_g000002
rosa_roxburghii Rroxscaffold_2G00077500 Rroxscaffold_2G00083750 Rroxscaffold_2G00083760 Rroxscaffold_2G00087160 Rroxscaffold_2G00132530 Rroxscaffold_4G00290030 Rroxscaffold_4G00290040 Rroxscaffold_4G00290280
rosa_rugosa Rorug01G0328400 Rorug02G0265200 Rorug02G0265900 Rorug02G0266000 Rorug02G0266800.1 Rorug02G0266900.1 Rorug02G0267500 Rorug02G0267600 Rorug02G0268300 Rorug02G0268800 Rorug02G0268900 Rorug02G0503600 Rorug02G0528200 Rorug02G0528300 Rorug03G0247200 Rorug03G0247300
rosa_samantha Rh1BG298400 Rh1DG329800 Rh2AG570500 Rh2AG570700 Rh2AG595000 Rh2AG595100 Rh2AG595200 Rh2CG552500 Rh2CG552700 Rh2CG577100 Rh2CG577200 Rh2DG592500 Rh2DG617800 Rh2DG617900 Rh3CG333000 Rh3DG335000
rosa_wichuraiana Rw2G047230 Rw2G049530 Rw2G049540 Rw3G026510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 257
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 31, 124
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 2 cut(s) 31, 124
BbvI GCAGC 1 cut(s) 113
BceAI ACGGC 2 cut(s) 188, 283
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme18I GGWCC 2 cut(s) 31, 124
BmgT120I GGNCC 2 cut(s) 31, 124
BmiI GGNNCC 1 cut(s) 125
BmsI GCATC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 46
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 12, 262
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 125
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 187
BssMI GATC 2 cut(s) 12, 262
Bst4CI ACNGT 1 cut(s) 197
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 15, 265
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 12, 262
BstV1I GCAGC 1 cut(s) 113
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 31, 124
CviJI RGCY 4 cut(s) 10, 120, 237, 298
CviKI_1 RGCY 4 cut(s) 10, 120, 237, 298
DpnI GATC 2 cut(s) 14, 264
DpnII GATC 2 cut(s) 12, 262
Eco47I GGWCC 2 cut(s) 31, 124
FaiI YATR 3 cut(s) 29, 66, 180
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 102
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 10
HinfI GANTC 3 cut(s) 55, 147, 212
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 4 cut(s) 54, 152, 262, 304
Hpy188III TCNNGA 1 cut(s) 266
Hpy99I CGWCG 2 cut(s) 209, 304
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 12, 262
LpnPI CCDG 3 cut(s) 32, 106, 200
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 20
MalI GATC 2 cut(s) 14, 264
MboI GATC 2 cut(s) 12, 262
MboII GAAGA 3 cut(s) 101, 104, 155
MfeI CAATTG 1 cut(s) 155
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 2 cut(s) 93, 282
MnlI CCTC 5 cut(s) 31, 67, 74, 109, 236
MseI TTAA 1 cut(s) 192
MunI CAATTG 1 cut(s) 155
NdeII GATC 2 cut(s) 12, 262
NlaIV GGNNCC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 55, 212
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 2 cut(s) 31, 124
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 2 cut(s) 12, 262
Sau96I GGNCC 2 cut(s) 31, 124
SchI GAGTC 1 cut(s) 156
SetI ASST 4 cut(s) 21, 51, 85, 250
SfaNI GCATC 1 cut(s) 169
SgeI CNNG 9 cut(s) 32, 47, 59, 133, 199, 212, 228, 278, 304
SinI GGWCC 2 cut(s) 31, 124
Sse9I AATT 1 cut(s) 155
SspMI CTAG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 197
TasI AATT 1 cut(s) 155
TfiI GAWTC 2 cut(s) 55, 212
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseI GCWGC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 2 cut(s) 23, 116
VpaK11BI GGWCC 2 cut(s) 31, 124
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.