Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004491

Physical Location & Seq

Genomic Coordinates Reverse (-)

23104546 .. 23108314

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0246700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCAGCGAAGCTGGGAATGCTCCATTATGTATTGGACCATGTGTATGGTGCATTCATGCACAGAACCAAGATAAGCCCTCAGTTTTTTTCAAGAGGGTGGGGTGGTAAACAGCTTGAATTGCTGGAGAGGATGATCAACCAGCTATTTCCAGAGGCTGCAGGGCAGAATTGGCCTCCCATTTTGGTCCGGCCCACTTGGAAAACTGTTTGGGATAGCAAGAACGCTTGTCTTCGAGAAGGGGTGTTCAGAACTCCTTGTGATGAGCAGCTTCTTAGTGCATTGCCTCCTGAGAGTCACAACGCGAGAGTTGCTTTTCTTGTTCCGAAATCGGTTCCCCCTCAGAAAATGGCTTGTGTGGTTCATCTTGCAGGGACTGGGGACCATTCATTTGAACGAAGGTTACGACTTGGGGGACCATTATTGAAGGAAAACATTGCAACTATGGTGCTTGAGAGCCCTTTCTATGGACAAAGACGTCCTATGATGCAGCGTGGTGCAAAGCTATTGTGTGTTAGTGACTTGCTTTTATTAGGAAAGGCAACCATTGAAGAAGCCCGCAGTCTCTTGCATTGGTTAGACTCTGAGGAAGGGTTTGGGAAGATGGGTGTTTGTGGACTTAGTATGGGAGGAGTACATGCTGCAATGGTTGGATCACTGCACCCCACACCTGTTGCAACTCTTCCTTTTCTATCTCCACACTCTGCTACTGTGGCATTCTGTGAGGGAATATTACAGCATGCTACTGCATGGGAGGCACTGAGAAAGGATCTTGCAGTAATGACTCTCGAGGAGGTCAGAGAACGAATGCGCAGTGTTTTGTCTCTCACAGATGTGACACGCTTTCCAATTCCAAAAAATCCCAATGCTGTGATATTTGTCTCTGCTACTGATGATGGGTACATCCCAAAACACTCTGTGCTAGAGCTTCAAAAAGCTTGGCCTGGTTCAGAAGTAAGATGGGTCACTGGTGGACATGTCTCATCTTTCCTTCTCCACAATGGCGAGTTCCGCAGGGCCATTGTTGATGGACTTGACAGATTAGAATGGAAGGAGTCTCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168

Pfam Domains

Protein Families

FoP_duplication RRM_1

Protein Analysis

355

Amino Acids

39.52

Weight (kDa)

8.71

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABHD18	PF09752	28 - 258	5.8e-92	Alpha/beta hydrolase domain containing 18
ABHD18	PF09752	261 - 347	6.4e-33	Alpha/beta hydrolase domain containing 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02530 AT5G02530
malus_domestica	MD07G1194100.v1.1
prunus_persica	Prupe.2G231500_v2.0.a1 Prupe.2G231500_v2.0.a1
pyrus_communis	pycom07g18290
rosa_chinensis	RchiOBHm_Chr1g0366271 RchiOBHm_Chr3g0492141
rosa_laevigata	RLG00000022825 RLG00000027356
rosa_multiflora	Rmu_sc0003736.1_g000006 Rmu_sc0011454.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290370
rosa_rugosa	Rorug01G0328400 Rorug02G0265200 Rorug02G0266100 Rorug02G0266200 Rorug02G0266700.1 Rorug02G0267400 Rorug02G0268700 Rorug02G0268700 Rorug02G0269500 Rorug02G0270000 Rorug03G0246700 Rorug03G0247400
rosa_samantha	Rh1AG336700 Rh1BG298200 Rh1DG329700 Rh3CG333100 Rh3DG335100
rosa_wichuraiana	Rw1G029840 Rw3G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	477
AatII	GACGTC	1 cut(s)	481
Acc16I	TGCGCA	1 cut(s)	812
AccII	CGCG	1 cut(s)	305
AciI	CCGC	2 cut(s)	559, 1012
AclWI	GGATC	2 cut(s)	661, 777
AcyI	GRCGYC	1 cut(s)	478
AdeI	CACNNNGTG	1 cut(s)	919
AfaI	GTAC	2 cut(s)	636, 902
AfiI	CCNNNNNNNGG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	976
AgsI	TTSAA	6 cut(s)	93, 119, 395, 427, 551, 932
AjnI	CCWGG	1 cut(s)	943
AleI	CACNNNNGTG	1 cut(s)	833
AluBI	AGCT	7 cut(s)	13, 115, 145, 271, 505, 928, 938
AluI	AGCT	7 cut(s)	13, 115, 145, 271, 505, 928, 938
Alw26I	GTCTC	5 cut(s)	569, 828, 886, 985, 1062
AlwI	GGATC	2 cut(s)	661, 777
AlwNI	CAGNNNCTG	2 cut(s)	158, 377
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	4 cut(s)	173, 191, 941, 1017
ApeKI	GCWGC	5 cut(s)	5, 158, 268, 490, 641
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	1 cut(s)	813
AspS9I	GGNCC	6 cut(s)	37, 187, 192, 382, 416, 1017
AvaI	CYCGRG	1 cut(s)	788
AvaII	GGWCC	4 cut(s)	37, 187, 382, 416
BanII	GRGCYC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	5 cut(s)	17, 145, 280, 502, 628
BccI	CCATC	4 cut(s)	598, 890, 954, 1022
BciT130I	CCWGG	1 cut(s)	945
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	5 cut(s)	569, 828, 886, 985, 1062
BfaI	CTAG	1 cut(s)	923
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
BlsI	GCNGC	5 cut(s)	7, 160, 270, 492, 643
Bme1390I	CCNGG	1 cut(s)	945
Bme18I	GGWCC	4 cut(s)	37, 187, 382, 416
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	6 cut(s)	37, 187, 192, 382, 416, 1017
BmiI	GGNNCC	3 cut(s)	336, 383, 417
BmrFI	CCNGG	1 cut(s)	945
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	477
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	382, 973
Bse3DI	GCAATG	3 cut(s)	281, 435, 651
BseBI	CCWGG	1 cut(s)	945
BseGI	GGATG	2 cut(s)	138, 903
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	3 cut(s)	281, 435, 651
BseMII	CTCAG	5 cut(s)	95, 282, 356, 576, 752
BseNI	ACTGG	2 cut(s)	382, 973
BseRI	GAGGAG	2 cut(s)	645, 806
BseXI	GCAGC	5 cut(s)	17, 145, 280, 502, 628
BseYI	CCCAGC	1 cut(s)	13
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	4 cut(s)	175, 193, 943, 1019
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	3 cut(s)	388, 395, 429
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	5 cut(s)	569, 828, 886, 985, 1062
BsmFI	GGGAC	3 cut(s)	388, 395, 429
BsmI	GAATGC	4 cut(s)	24, 53, 716, 813
BsnI	GGCC	4 cut(s)	175, 193, 943, 1019
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	3 cut(s)	135, 653, 769
BspACI	CCGC	2 cut(s)	559, 1012
BspANI	GGCC	4 cut(s)	175, 193, 943, 1019
BspCNI	CTCAG	5 cut(s)	94, 283, 355, 577, 753
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	3 cut(s)	336, 383, 417
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	2 cut(s)	661, 777
BsrDI	GCAATG	3 cut(s)	281, 435, 651
BsrI	ACTGG	2 cut(s)	382, 973
BssMI	GATC	3 cut(s)	135, 653, 769
BssNI	GRCGYC	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	945
Bst4CI	ACNGT	2 cut(s)	208, 712
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	1 cut(s)	478
BstC8I	GCNNGC	2 cut(s)	559, 741
BstDEI	CTNAG	7 cut(s)	81, 275, 291, 342, 585, 620, 761
BstF5I	GGATG	2 cut(s)	138, 903
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	138, 656, 772
BstMAI	GTCTC	5 cut(s)	569, 828, 886, 985, 1062
BstMBI	GATC	3 cut(s)	135, 653, 769
BstMWI	GCNNNNNNNGC	7 cut(s)	19, 121, 172, 311, 713, 755, 1011
BstNI	CCWGG	1 cut(s)	945
BstNSI	RCATGY	3 cut(s)	641, 743, 980
BstSCI	CCNGG	1 cut(s)	943
BstSFI	CTRYAG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	5 cut(s)	17, 145, 280, 502, 628
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	4 cut(s)	175, 193, 943, 1019
BtsCI	GGATG	2 cut(s)	138, 903
BtsI	GCAGTG	2 cut(s)	656, 820
BtsIMutI	CAGTG	4 cut(s)	656, 758, 820, 966
Cac8I	GCNNGC	2 cut(s)	559, 741
CaiI	CAGNNNCTG	2 cut(s)	158, 377
CfoI	GCGC	1 cut(s)	813
Cfr13I	GGNCC	6 cut(s)	37, 187, 192, 382, 416, 1017
Csp6I	GTAC	2 cut(s)	635, 901
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	6 cut(s)	41, 58, 638, 740, 750, 977
CviQI	GTAC	2 cut(s)	635, 901
DdeI	CTNAG	7 cut(s)	81, 275, 291, 342, 585, 620, 761
DpnI	GATC	3 cut(s)	137, 655, 771
DpnII	GATC	3 cut(s)	135, 653, 769
DraIII	CACNNNGTG	1 cut(s)	919
DrdI	GACNNNNNNGTC	1 cut(s)	477
DseDI	GACNNNNNNGTC	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco24I	GRGCYC	1 cut(s)	461
Eco47I	GGWCC	4 cut(s)	37, 187, 382, 416
Eco88I	CYCGRG	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	943
EcoT38I	GRGCYC	1 cut(s)	461
FaeI	CATG	6 cut(s)	44, 61, 641, 743, 753, 980
FaqI	GGGAC	3 cut(s)	388, 395, 429
FatI	CATG	6 cut(s)	40, 57, 637, 739, 749, 976
FauI	CCCGC	1 cut(s)	566
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
FokI	GGATG	2 cut(s)	145, 890
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
FspBI	CTAG	1 cut(s)	923
FspI	TGCGCA	1 cut(s)	812
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	175, 193, 943, 1019
HapII	CCGG	1 cut(s)	190
HhaI	GCGC	1 cut(s)	813
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	6 cut(s)	44, 61, 641, 743, 753, 980
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	936
HinfI	GANTC	4 cut(s)	295, 581, 784, 1055
HpaII	CCGG	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	110, 617, 974
Hpy188I	TCNGA	6 cut(s)	251, 327, 345, 586, 800, 952
Hpy188III	TCNNGA	5 cut(s)	93, 152, 236, 290, 788
Hpy8I	GTNNAC	3 cut(s)	110, 617, 974
HpyAV	CCTTC	6 cut(s)	233, 393, 421, 584, 1001, 1045
HpyCH4III	ACNGT	2 cut(s)	208, 712
HpyCH4IV	ACGT	1 cut(s)	478
HpyF10VI	GCNNNNNNNGC	7 cut(s)	19, 121, 172, 311, 713, 755, 1011
HpyF3I	CTNAG	7 cut(s)	81, 275, 291, 342, 585, 620, 761
HpySE526I	ACGT	1 cut(s)	478
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	6 cut(s)	44, 61, 641, 743, 753, 980
HspAI	GCGC	1 cut(s)	811
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	135, 653, 769
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	5 cut(s)	17, 145, 280, 502, 628
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	1 cut(s)	923
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	5 cut(s)	296, 402, 518, 835, 964
MalI	GATC	3 cut(s)	137, 655, 771
MboI	GATC	3 cut(s)	135, 653, 769
MboII	GAAGA	4 cut(s)	224, 563, 613, 674
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	3 cut(s)	119, 169, 849
MlyI	GAGTC	4 cut(s)	304, 575, 778, 1064
MmeI	TCCRAC	1 cut(s)	631
MslI	CAYNNNNRTG	2 cut(s)	45, 833
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	945
Mva1269I	GAATGC	4 cut(s)	24, 53, 716, 813
MvaI	CCWGG	1 cut(s)	945
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	7 cut(s)	19, 121, 172, 311, 713, 755, 1011
NdeII	GATC	3 cut(s)	135, 653, 769
NlaIII	CATG	6 cut(s)	44, 61, 641, 743, 753, 980
NlaIV	GGNNCC	3 cut(s)	336, 383, 417
NmuCI	GTSAC	4 cut(s)	296, 518, 835, 964
NsbI	TGCGCA	1 cut(s)	812
NspI	RCATGY	3 cut(s)	641, 743, 980
OliI	CACNNNNGTG	1 cut(s)	833
PaeI	GCATGC	1 cut(s)	743
PaeR7I	CTCGAG	1 cut(s)	788
PciI	ACATGT	1 cut(s)	976
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	4 cut(s)	24, 53, 716, 813
PkrI	GCNGC	5 cut(s)	7, 160, 270, 492, 643
PleI	GAGTC	4 cut(s)	303, 575, 778, 1063
PpsI	GAGTC	4 cut(s)	303, 575, 778, 1063
PscI	ACATGT	1 cut(s)	976
Psp6I	CCWGG	1 cut(s)	943
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	943
PspN4I	GGNNCC	3 cut(s)	336, 383, 417
PspPI	GGNCC	6 cut(s)	37, 187, 192, 382, 416, 1017
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	2 cut(s)	158, 377
PsuI	RGATCY	1 cut(s)	769
RsaI	GTAC	2 cut(s)	636, 902
RsaNI	GTAC	2 cut(s)	635, 901
RseI	CAYNNNNRTG	2 cut(s)	45, 833
SatI	GCNGC	5 cut(s)	6, 159, 269, 491, 642
Sau3AI	GATC	3 cut(s)	135, 653, 769
Sau96I	GGNCC	6 cut(s)	37, 187, 192, 382, 416, 1017
SchI	GAGTC	4 cut(s)	304, 575, 778, 1064
ScrFI	CCNGG	1 cut(s)	945
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	788
SinI	GGWCC	4 cut(s)	37, 187, 382, 416
SlaI	CTCGAG	1 cut(s)	788
SmiMI	CAYNNNNRTG	2 cut(s)	45, 833
SmlI	CTYRAG	2 cut(s)	452, 788
SmoI	CTYRAG	2 cut(s)	452, 788
SphI	GCATGC	1 cut(s)	743
Sse9I	AATT	3 cut(s)	119, 169, 849
SsiI	CCGC	2 cut(s)	559, 1012
SspI	AATATT	1 cut(s)	732
SspMI	CTAG	1 cut(s)	923
StyD4I	CCNGG	1 cut(s)	943
TaaI	ACNGT	2 cut(s)	208, 712
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	2 cut(s)	235, 789
TasI	AATT	3 cut(s)	119, 169, 849
TatI	WGTACW	1 cut(s)	634
TscAI	CASTG	4 cut(s)	663, 765, 820, 973
TseFI	GTSAC	4 cut(s)	296, 518, 835, 964
TseI	GCWGC	5 cut(s)	5, 158, 268, 490, 641
Tsp45I	GTSAC	4 cut(s)	296, 518, 835, 964
TspDTI	ATGAA	3 cut(s)	46, 353, 378
TspRI	CASTG	4 cut(s)	663, 765, 820, 973
VpaK11BI	GGWCC	4 cut(s)	37, 187, 382, 416
XceI	RCATGY	3 cut(s)	641, 743, 980
XhoI	CTCGAG	1 cut(s)	788
XspI	CTAG	1 cut(s)	923
ZraI	GACGTC	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.