Rh1DG329700

THO complex subunit 4A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004491
Physical Location & Seq
Forward (+)
55484318 .. 55487018
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG329700.1

Sequence Viewer

Length: 903 bp
ATGCCCCTCCCTCAGGACCGCCTGGACCTCCCTCTCGACGCCCTCATCGCCGAATCCAAGCAACAACGCCGTCACAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGCGGCAGAGGCCGTGGAGGCTCCACCTCAGGCCCCGCTCGTCGGCCGATGAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCGGAAATGCAAGGACAGCCTGGACCCAGAAGGATTGAGCTGCCATTGGCTTTGAGCCAAGCGATGAACAGAGAGGGGAGCACCAAGCTTTATATATCTAACTTGGACTATGATGTTACCAATAGAGATATAGAGTTGCTCTTCTCTGAGGTTGGTGAGTTGGAAAGGCACTCAATCCATTATGATAAAAGTGGAAGATCTAAGGGAACAGCTGAAGTTGTCTATAAGCACCATTCAGATGCTCTAACAGCAATTGAGAGATATAACAATCAGCATCTTGATGGAAAGAGAGTGGAAATTAAGCTTGTGGGACTCAATGTTGTTTCTCCTGTTCCTCTGCTTCTGCCTCCAAATACAAATTTCTGGCAAGAAAATCCAAGTCCTGTCTTCCAGAGGCTAGGAAGAGCTGGTTCAAGGGGATCATTTCATGGTCATGGTGGTGTTGGACTTAAAAGAGGCCGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCAGCAATGGAAGAATGTGACTACAGAATCTCAGCAAAGGAAGAATGTGACTGCAGAAAATCAGCAAAGGAAGAATGTGATTACAGAATCTGTTAACAGGAAGAAAACTTTTTATGGAGATACAACAGTGACTTTTGAAGATCTGGATGCTGATTTGGAGAAATACCGCCTAAAAGGTAGGCCGGTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168
Pfam Domains
Protein Families
FoP_duplication RRM_1

Protein Analysis

300

Amino Acids

33.72

Weight (kDa)

10.01

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 99 - 167 2.1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 155
AciI CCGC 5 cut(s) 19, 120, 153, 172, 877
AclWI GGATC 1 cut(s) 634
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 565
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 2 cut(s) 39, 191
AfiI CCNNNNNNNGG 3 cut(s) 13, 159, 673
AgsI TTSAA 2 cut(s) 621, 848
AjnI CCWGG 2 cut(s) 21, 226
AluBI AGCT 5 cut(s) 247, 295, 419, 511, 614
AluI AGCT 5 cut(s) 247, 295, 419, 511, 614
Alw21I GWGCWC 1 cut(s) 290
AlwI GGATC 1 cut(s) 634
AlwNI CAGNNNCTG 1 cut(s) 800
AoxI GGCC 5 cut(s) 127, 148, 161, 664, 890
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 565
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 5 cut(s) 16, 25, 149, 230, 689
AsuHPI GGTGA 3 cut(s) 80, 374, 688
AvaII GGWCC 4 cut(s) 16, 25, 230, 689
AxyI CCTNAGG 2 cut(s) 12, 145
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BanI GGYRCC 1 cut(s) 190
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 482
BceAI ACGGC 5 cut(s) 54, 114, 178, 204, 651
BciT130I CCWGG 2 cut(s) 23, 228
BciVI GTATCC 1 cut(s) 207
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 4 cut(s) 181, 702, 732, 762
BfoI RGCGCY 1 cut(s) 194
BfuI GTATCC 1 cut(s) 207
BglI GCCNNNNNGGC 2 cut(s) 100, 135
BglII AGATCT 2 cut(s) 404, 850
BisI GCNGC 2 cut(s) 121, 248
BlsI GCNGC 2 cut(s) 122, 249
Bme1390I CCNGG 2 cut(s) 23, 228
Bme18I GGWCC 4 cut(s) 16, 25, 230, 689
BmgT120I GGNCC 5 cut(s) 16, 25, 149, 230, 689
BmiI GGNNCC 4 cut(s) 139, 151, 192, 232
BmrFI CCNGG 2 cut(s) 23, 228
BmsI GCATC 3 cut(s) 436, 490, 847
BpiI GAAGAC 1 cut(s) 586
BsaHI GRCGYC 2 cut(s) 39, 191
BsaJI CCNNGG 2 cut(s) 130, 667
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 159, 673
Bse118I RCCGGY 1 cut(s) 892
Bse21I CCTNAGG 2 cut(s) 12, 145
Bse3DI GCAATG 1 cut(s) 722
BseBI CCWGG 2 cut(s) 23, 228
BseDI CCNNGG 2 cut(s) 130, 667
BseGI GGATG 1 cut(s) 862
BseLI CCNNNNNNNGG 3 cut(s) 13, 159, 673
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 5 cut(s) 26, 159, 345, 725, 755
BseX3I CGGCCG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 5 cut(s) 129, 150, 163, 666, 892
BshNI GGYRCC 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 290
BsiSI CCGG 2 cut(s) 209, 893
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 3 cut(s) 13, 159, 673
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 5 cut(s) 129, 150, 163, 666, 892
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 3 cut(s) 404, 626, 850
BspACI CCGC 5 cut(s) 19, 120, 153, 172, 877
BspANI GGCC 5 cut(s) 129, 150, 163, 666, 892
BspCNI CTCAG 5 cut(s) 25, 158, 346, 724, 754
BspLI GGNNCC 4 cut(s) 139, 151, 192, 232
BspMAI CTGCAG 1 cut(s) 766
BspPI GGATC 1 cut(s) 634
BspQI GCTCTTC 2 cut(s) 353, 604
BspT107I GGYRCC 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 892
BssAI RCCGGY 1 cut(s) 892
BssECI CCNNGG 2 cut(s) 130, 667
BssMI GATC 3 cut(s) 404, 626, 850
BssNI GRCGYC 2 cut(s) 39, 191
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 23, 228
Bst4CI ACNGT 2 cut(s) 110, 838
Bst6I CTCTTC 2 cut(s) 353, 604
BstACI GRCGYC 2 cut(s) 39, 191
BstDEI CTNAG 6 cut(s) 12, 145, 354, 408, 711, 741
BstDSI CCRYGG 2 cut(s) 130, 667
BstENI CCTNNNNNAGG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 862
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 3 cut(s) 407, 629, 853
BstMBI GATC 3 cut(s) 404, 626, 850
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 7 cut(s) 47, 100, 126, 135, 214, 223, 455
BstNI CCWGG 2 cut(s) 23, 228
BstSCI CCNGG 2 cut(s) 21, 226
BstSFI CTRYAG 4 cut(s) 181, 702, 732, 762
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 2 cut(s) 404, 850
BstYI RGATCY 2 cut(s) 404, 850
BstZI CGGCCG 1 cut(s) 161
Bsu36I CCTNAGG 2 cut(s) 12, 145
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 5 cut(s) 129, 150, 163, 666, 892
BtgI CCRYGG 2 cut(s) 130, 667
BtgZI GCGATG 2 cut(s) 31, 284
BtsCI GGATG 1 cut(s) 862
BtsIMutI CAGTG 1 cut(s) 843
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 892
Cfr13I GGNCC 5 cut(s) 16, 25, 149, 230, 689
CseI GACGC 1 cut(s) 47
CviAII CATG 2 cut(s) 635, 641
DdeI CTNAG 6 cut(s) 12, 145, 354, 408, 711, 741
DinI GGCGCC 1 cut(s) 192
DpnI GATC 3 cut(s) 406, 628, 852
DpnII GATC 3 cut(s) 404, 626, 850
EaeI YGGCCR 1 cut(s) 161
EagI CGGCCG 1 cut(s) 161
Eam1104I CTCTTC 2 cut(s) 353, 604
EarI CTCTTC 2 cut(s) 353, 604
EclXI CGGCCG 1 cut(s) 161
Eco47I GGWCC 4 cut(s) 16, 25, 230, 689
Eco52I CGGCCG 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 441
Eco81I CCTNAGG 2 cut(s) 12, 145
EcoNI CCTNNNNNAGG 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 21, 226
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
FaeI CATG 2 cut(s) 638, 644
FaqI GGGAC 1 cut(s) 531
FatI CATG 2 cut(s) 634, 640
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 121, 248
FokI GGATG 1 cut(s) 869
Fsp4HI GCNGC 2 cut(s) 121, 248
FspBI CTAG 1 cut(s) 605
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 121, 248
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 5 cut(s) 129, 150, 163, 666, 892
HapII CCGG 2 cut(s) 209, 893
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 193
Hin1I GRCGYC 2 cut(s) 39, 191
Hin1II CATG 2 cut(s) 638, 644
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HindIII AAGCTT 2 cut(s) 293, 509
HinfI GANTC 5 cut(s) 53, 519, 707, 737, 797
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 2 cut(s) 209, 893
HphI GGTGA 3 cut(s) 80, 374, 688
Hpy166II GTNNAC 3 cut(s) 671, 805, 898
Hpy188I TCNGA 3 cut(s) 355, 445, 693
Hpy188III TCNNGA 5 cut(s) 14, 35, 485, 598, 854
Hpy8I GTNNAC 3 cut(s) 671, 805, 898
Hpy99I CGWCG 2 cut(s) 41, 162
HpyAV CCTTC 2 cut(s) 231, 688
HpyCH4III ACNGT 2 cut(s) 110, 838
HpyCH4V TGCA 2 cut(s) 217, 764
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 100, 126, 135, 214, 223, 455
HpyF3I CTNAG 6 cut(s) 12, 145, 354, 408, 711, 741
Hsp92I GRCGYC 2 cut(s) 39, 191
Hsp92II CATG 2 cut(s) 638, 644
HspAI GCGC 1 cut(s) 191
KasI GGCGCC 1 cut(s) 190
KspAI GTTAAC 1 cut(s) 805
Kzo9I GATC 3 cut(s) 404, 626, 850
LguI GCTCTTC 2 cut(s) 353, 604
LmnI GCTCC 2 cut(s) 143, 285
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 3 cut(s) 436, 490, 847
MaeI CTAG 1 cut(s) 605
MaeIII GTNAC 6 cut(s) 71, 322, 697, 727, 757, 838
MalI GATC 3 cut(s) 406, 628, 852
MbiI CCGCTC 1 cut(s) 155
MboI GATC 3 cut(s) 404, 626, 850
MboII GAAGA 9 cut(s) 340, 414, 586, 621, 733, 763, 793, 823, 860
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 2 cut(s) 404, 850
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 3 cut(s) 459, 504, 565
Mly113I GGCGCC 1 cut(s) 191
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 2 cut(s) 348, 631
MseI TTAA 3 cut(s) 507, 657, 804
MslI CAYNNNNRTG 4 cut(s) 444, 486, 639, 645
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 2 cut(s) 209, 893
MspR9I CCNGG 2 cut(s) 23, 228
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 2 cut(s) 23, 228
MwoI GCNNNNNNNGC 7 cut(s) 47, 100, 126, 135, 214, 223, 455
NarI GGCGCC 1 cut(s) 191
NdeII GATC 3 cut(s) 404, 626, 850
NlaIII CATG 2 cut(s) 638, 644
NlaIV GGNNCC 4 cut(s) 139, 151, 192, 232
NmuCI GTSAC 4 cut(s) 71, 727, 757, 838
PciSI GCTCTTC 2 cut(s) 353, 604
PfeI GAWTC 4 cut(s) 53, 707, 737, 797
PkrI GCNGC 2 cut(s) 122, 249
PleI GAGTC 1 cut(s) 513
PluTI GGCGCC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 21, 226
PspGI CCWGG 2 cut(s) 21, 226
PspN4I GGNNCC 4 cut(s) 139, 151, 192, 232
PspPI GGNCC 5 cut(s) 16, 25, 149, 230, 689
PstI CTGCAG 1 cut(s) 766
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 2 cut(s) 404, 850
PvuII CAGCTG 1 cut(s) 419
RseI CAYNNNNRTG 4 cut(s) 444, 486, 639, 645
SapI GCTCTTC 2 cut(s) 353, 604
SaqAI TTAA 3 cut(s) 507, 657, 804
SatI GCNGC 2 cut(s) 121, 248
Sau3AI GATC 3 cut(s) 404, 626, 850
Sau96I GGNCC 5 cut(s) 16, 25, 149, 230, 689
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 2 cut(s) 23, 228
SduI GDGCHC 1 cut(s) 290
SfaNI GCATC 3 cut(s) 436, 490, 847
SfcI CTRYAG 4 cut(s) 181, 702, 732, 762
SfoI GGCGCC 1 cut(s) 192
SinI GGWCC 4 cut(s) 16, 25, 230, 689
SmiMI CAYNNNNRTG 4 cut(s) 444, 486, 639, 645
Sse9I AATT 3 cut(s) 459, 504, 565
SsiI CCGC 5 cut(s) 19, 120, 153, 172, 877
SspDI GGCGCC 1 cut(s) 190
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 21, 226
TaaI ACNGT 2 cut(s) 110, 838
TaqI TCGA 1 cut(s) 36
TasI AATT 3 cut(s) 459, 504, 565
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 4 cut(s) 53, 707, 737, 797
Tru1I TTAA 3 cut(s) 507, 657, 804
Tru9I TTAA 3 cut(s) 507, 657, 804
TscAI CASTG 1 cut(s) 843
TseFI GTSAC 4 cut(s) 71, 727, 757, 838
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 4 cut(s) 71, 727, 757, 838
TspDTI ATGAA 3 cut(s) 182, 287, 623
TspRI CASTG 1 cut(s) 843
VpaK11BI GGWCC 4 cut(s) 16, 25, 230, 689
XagI CCTNNNNNAGG 1 cut(s) 11
XapI RAATTY 1 cut(s) 565
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.