Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Reverse (-)

23212043 .. 23215136

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0247400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTATAATAGTGCCTCGCCTATCAAATCGTTGCAAACAGAGTTGCCGTTAATGGATTCAAATACCCATTTCAATCTGGAGCACCAACAGCCCCACCACCAACCCAATTCTGGGTTGCTCCGATTTCGCTCTGCTCCGAGCTCACTGTTCGCTGACAACAACAACAACAACAACGCCGATTTGGGGGTCAATAAGGGAACTTCAATCGAGGGTGGTTCCGACTCCGACAGATTGTTCTCGAGATTCGTGAGCTACAGTCACAGTAACGACTCGGAATCGTGGCCGTCGAGTTTCCAGGAGTTCGAGGACAAATCTACGGTGACGGAGGCGGCTGTGACGGCGAGTCGTATGAGCTCACAGCTTCAGCAGCAGCAGCAGGGGTTTCCTGGTCTTCCACCTCATTATCCGAGACAGAACTCGTTTGGGAGTGGTAATGGCTCTTATGGGTTGGTGGGTTCGGCCGCAGTGGATCATCACCCGCAAGCCAAGACTGTTACTTCCAATCTTGTTCGGCAGAGTAGTTCTCCTGCTGGGCTTTTCTCCAACAACACCTCTGTTCAAAATGGATTCCCATTTGGAGCATGGAATGATCCATCAAATTTTGCTGATAATTTAGGTGGCATGAGAAGAGACCAAGATAATGACCAGAAATTATTCTCTGCTACTCAGAATGGTGATCTTGGGAACCGGATTCATATATTATCCCACCACTTGAGTTTACCAAAAAATTCAGCAGAAGTTGCCATGGAAAAGTTCCTCCAACTCCAAGATTCTGTACCTTGCAAAGTTAGAGCAAAGCGAGGTTGTGCCACTCATCCTCGAAGCATTGCAGAAAGGGTGAGAAGAACACGGATTAGTGAACGAATGAGGAAGCTACAAGAGCTTGTGCCGAACATGGACAAGCAAACAAATACAGCAGACATGTTGGACTTGGCTGTTGATTATATTAAAGAACTTCAGAAACAGTTCAAGAGTCTTAGCGATGTTCGAGCCAACTGCAAGTGTTTGAGTATGCAGAAGCCCGTTCAAAATCAGATAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

347

Amino Acids

38.49

Weight (kDa)

8.63

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	275 - 320	6.9e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	329, 462, 479
AclWI	GGATC	2 cut(s)	477, 584
AcoI	YGGCCR	2 cut(s)	281, 459
AcsI	RAATTY	2 cut(s)	598, 727
AcuI	CTGAAG	2 cut(s)	347, 941
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	3 cut(s)	110, 111, 183
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	6 cut(s)	60, 73, 204, 560, 970, 1028
AhdI	GACNNNNNGTC	1 cut(s)	342
AjnI	CCWGG	2 cut(s)	294, 385
AluBI	AGCT	6 cut(s)	141, 252, 354, 361, 874, 883
AluI	AGCT	6 cut(s)	141, 252, 354, 361, 874, 883
Alw21I	GWGCWC	3 cut(s)	84, 143, 356
Alw26I	GTCTC	2 cut(s)	403, 624
AlwI	GGATC	2 cut(s)	477, 584
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	2 cut(s)	281, 459
ApeKI	GCWGC	3 cut(s)	367, 370, 373
ApoI	RAATTY	2 cut(s)	598, 727
Asp700I	GAANNNNTTC	2 cut(s)	653, 965
AsuHPI	GGTGA	4 cut(s)	331, 467, 686, 850
AvaI	CYCGRG	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	143, 356
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	3 cut(s)	84, 143, 356
BbvI	GCAGC	3 cut(s)	379, 382, 385
BccI	CCATC	1 cut(s)	601
BceAI	ACGGC	3 cut(s)	31, 268, 354
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BciT130I	CCWGG	2 cut(s)	296, 387
BcoDI	GTCTC	2 cut(s)	403, 624
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	5 cut(s)	330, 368, 371, 374, 462
BlsI	GCNGC	5 cut(s)	331, 369, 372, 375, 463
Bme1390I	CCNGG	2 cut(s)	296, 387
BmeRI	GACNNNNNGTC	1 cut(s)	342
BmeT110I	CYCGRG	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	217, 686
BmrFI	CCNGG	2 cut(s)	296, 387
BpiI	GAAGAC	1 cut(s)	383
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpmI	CTGGAG	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	733
BsaI	GGTCTC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	744
BsaWI	WCCGGW	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 111, 183
Bse3DI	GCAATG	1 cut(s)	825
BseBI	CCWGG	2 cut(s)	296, 387
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	1 cut(s)	814
BseLI	CCNNNNNNNGG	3 cut(s)	110, 111, 183
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	1 cut(s)	680
BseX3I	CGGCCG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	379, 382, 385
BseYI	CCCAGC	1 cut(s)	530
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	2 cut(s)	283, 461
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	3 cut(s)	84, 143, 356
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	688
BslI	CCNNNNNNNGG	3 cut(s)	110, 111, 183
BsmAI	GTCTC	2 cut(s)	403, 624
BsnI	GGCC	2 cut(s)	283, 461
Bso31I	GGTCTC	1 cut(s)	624
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	3 cut(s)	84, 143, 356
Bsp143I	GATC	3 cut(s)	469, 589, 676
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	3 cut(s)	329, 462, 479
BspANI	GGCC	2 cut(s)	283, 461
BspCNI	CTCAG	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	217, 686
BspPI	GGATC	2 cut(s)	477, 584
BspTNI	GGTCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	825
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	3 cut(s)	469, 589, 676
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	2 cut(s)	296, 387
Bst4CI	ACNGT	6 cut(s)	147, 257, 263, 319, 493, 966
Bst6I	CTCTTC	1 cut(s)	622
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	666, 977
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	1 cut(s)	814
BstKTI	GATC	3 cut(s)	472, 592, 679
BstMAI	GTCTC	2 cut(s)	403, 624
BstMBI	GATC	3 cut(s)	469, 589, 676
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 338, 367, 373, 740, 880
BstNI	CCWGG	2 cut(s)	296, 387
BstNSI	RCATGY	1 cut(s)	925
BstSCI	CCNGG	2 cut(s)	294, 385
BstSFI	CTRYAG	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	379, 382, 385
BstV2I	GAAGAC	1 cut(s)	383
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	283, 461
BtgI	CCRYGG	1 cut(s)	744
BtgZI	GCGATG	1 cut(s)	996
BtsCI	GGATG	1 cut(s)	814
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	143, 471
Cac8I	GCNNGC	1 cut(s)	483
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	5 cut(s)	582, 622, 745, 895, 922
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	2 cut(s)	666, 977
DpnI	GATC	3 cut(s)	471, 591, 678
DpnII	GATC	3 cut(s)	469, 589, 676
DriI	GACNNNNNGTC	1 cut(s)	342
EaeI	YGGCCR	2 cut(s)	281, 459
EagI	CGGCCG	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	622
Eam1105I	GACNNNNNGTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	622
Ecl136II	GAGCTC	2 cut(s)	141, 354
EclXI	CGGCCG	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	2 cut(s)	143, 356
Eco31I	GGTCTC	1 cut(s)	624
Eco52I	CGGCCG	1 cut(s)	459
Eco53kI	GAGCTC	2 cut(s)	141, 354
Eco57I	CTGAAG	2 cut(s)	347, 941
Eco88I	CYCGRG	1 cut(s)	238
EcoICRI	GAGCTC	2 cut(s)	141, 354
EcoRII	CCWGG	2 cut(s)	294, 385
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	2 cut(s)	143, 356
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	5 cut(s)	585, 625, 748, 898, 925
FatI	CATG	5 cut(s)	581, 621, 744, 894, 921
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	5 cut(s)	330, 368, 371, 374, 462
FokI	GGATG	1 cut(s)	801
FriOI	GRGCYC	2 cut(s)	143, 356
Fsp4HI	GCNGC	5 cut(s)	330, 368, 371, 374, 462
GluI	GCNGC	5 cut(s)	330, 368, 371, 374, 462
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	283, 461
HapII	CCGG	1 cut(s)	688
Hin1II	CATG	5 cut(s)	585, 625, 748, 898, 925
HpaII	CCGG	1 cut(s)	688
HphI	GGTGA	4 cut(s)	331, 467, 686, 850
Hpy166II	GTNNAC	2 cut(s)	719, 860
Hpy188I	TCNGA	9 cut(s)	122, 138, 220, 226, 274, 408, 669, 960, 1035
Hpy188III	TCNNGA	5 cut(s)	77, 238, 240, 247, 970
Hpy8I	GTNNAC	2 cut(s)	719, 860
Hpy99I	CGWCG	1 cut(s)	289
HpyCH4III	ACNGT	6 cut(s)	147, 257, 263, 319, 493, 966
HpyCH4V	TGCA	5 cut(s)	34, 783, 830, 999, 1015
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 338, 367, 373, 740, 880
HpyF3I	CTNAG	2 cut(s)	666, 977
Hsp92II	CATG	5 cut(s)	585, 625, 748, 898, 925
Kzo9I	GATC	3 cut(s)	469, 589, 676
LmnI	GCTCC	4 cut(s)	79, 123, 139, 578
Lsp1109I	GCAGC	3 cut(s)	379, 382, 385
MaeIII	GTNAC	5 cut(s)	257, 263, 319, 334, 493
MalI	GATC	3 cut(s)	471, 591, 678
MboI	GATC	3 cut(s)	469, 589, 676
MboII	GAAGA	3 cut(s)	383, 639, 855
MhlI	GDGCHC	3 cut(s)	84, 143, 356
MluCI	AATT	5 cut(s)	106, 598, 610, 650, 727
MlyI	GAGTC	4 cut(s)	215, 263, 352, 982
MmeI	TCCRAC	5 cut(s)	243, 249, 567, 784, 906
MroXI	GAANNNNTTC	2 cut(s)	653, 965
MseI	TTAA	2 cut(s)	50, 948
MspI	CCGG	1 cut(s)	688
MspR9I	CCNGG	2 cut(s)	296, 387
MvaI	CCWGG	2 cut(s)	296, 387
MwoI	GCNNNNNNNGC	6 cut(s)	88, 338, 367, 373, 740, 880
NcoI	CCATGG	1 cut(s)	744
NdeII	GATC	3 cut(s)	469, 589, 676
NlaIII	CATG	5 cut(s)	585, 625, 748, 898, 925
NlaIV	GGNNCC	2 cut(s)	217, 686
NmuCI	GTSAC	3 cut(s)	257, 319, 334
NspI	RCATGY	1 cut(s)	925
PaeR7I	CTCGAG	1 cut(s)	238
PciI	ACATGT	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PdmI	GAANNNNTTC	2 cut(s)	653, 965
PfeI	GAWTC	6 cut(s)	56, 243, 275, 567, 691, 770
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	5 cut(s)	331, 369, 372, 375, 463
PleI	GAGTC	4 cut(s)	215, 263, 351, 981
PpsI	GAGTC	4 cut(s)	215, 263, 351, 981
PscI	ACATGT	1 cut(s)	921
Psp124BI	GAGCTC	2 cut(s)	143, 356
Psp6I	CCWGG	2 cut(s)	294, 385
PspFI	CCCAGC	1 cut(s)	530
PspGI	CCWGG	2 cut(s)	294, 385
PspN4I	GGNNCC	2 cut(s)	217, 686
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
SacI	GAGCTC	2 cut(s)	143, 356
SaqAI	TTAA	2 cut(s)	50, 948
SatI	GCNGC	5 cut(s)	330, 368, 371, 374, 462
Sau3AI	GATC	3 cut(s)	469, 589, 676
SchI	GAGTC	4 cut(s)	215, 263, 352, 982
ScrFI	CCNGG	2 cut(s)	296, 387
SduI	GDGCHC	3 cut(s)	84, 143, 356
SfcI	CTRYAG	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	238, 712
SmoI	CTYRAG	2 cut(s)	238, 712
Sse9I	AATT	5 cut(s)	106, 598, 610, 650, 727
SsiI	CCGC	3 cut(s)	329, 462, 479
SstI	GAGCTC	2 cut(s)	143, 356
StyD4I	CCNGG	2 cut(s)	294, 385
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	6 cut(s)	147, 257, 263, 319, 493, 966
TaqI	TCGA	6 cut(s)	207, 239, 287, 303, 820, 988
TasI	AATT	5 cut(s)	106, 598, 610, 650, 727
TauI	GCSGC	2 cut(s)	332, 464
TfiI	GAWTC	6 cut(s)	56, 243, 275, 567, 691, 770
Tru1I	TTAA	2 cut(s)	50, 948
Tru9I	TTAA	2 cut(s)	50, 948
TscAI	CASTG	2 cut(s)	150, 471
TseFI	GTSAC	3 cut(s)	257, 319, 334
TseI	GCWGC	3 cut(s)	367, 370, 373
Tsp45I	GTSAC	3 cut(s)	257, 319, 334
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	2 cut(s)	338, 865
TspRI	CASTG	2 cut(s)	150, 471
XapI	RAATTY	2 cut(s)	598, 727
XceI	RCATGY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 579
XhoI	CTCGAG	1 cut(s)	238
XmnI	GAANNNNTTC	2 cut(s)	653, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.