Rh3DG373000

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002050
Physical Location & Seq
Reverse (-)
47742568 .. 47745911
3344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG373000.1

Sequence Viewer

Length: 606 bp
ATGGAGAAGGCCAAGCTTCTGGTCCTATTTCTGATATGGAGAAAGATTGACAAATTAGATCAAGAAGGTGGAGACAACGTTTTACTCCATCTAAGAATACTATTTATATTGCTTTGCATGATTAGTCTTATACCTCCTCCAACCATTCCACCCAATGTGAAGCCAGGAGTCCTGACTTCTCCAAAGTATTCTATTACGAGCAGGAAACAATTGCTTGGAAACCACTTCAAACTCACTGTGAAAGCTCCAGATTCTGTATTTTACCAATATTCTGTTCATATTACTTCTGAAAACAAGAAGGCCGCTCAAGGCAAGGGAATTGGCAGAGAACTGGTTGATAGGCTCTATCAAACATATTCCTCTAAACTTGCTGATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTATATACAGTTGGTCCTCTACCGCAGAACAAGCTTGACTTTACAGTTCCCCAGAGGAGACATCTGCAAAGAGAAAAATGTAAGCCATGCATTACCAGTATAATGGACTTCAATTTTGTTCAAGCACCTGGATGCCATCAACAACCGTACTCAACTTTACGATGGTCACAAAAGTCTGGCCCTTCATTTCTGAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

201

Amino Acids

23.03

Weight (kDa)

9.76

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 70 - 155 7.3e-16 N-terminal domain of argonaute
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 305
AciI CCGC 2 cut(s) 303, 428
AclI AACGTT 1 cut(s) 78
AcsI RAATTY 1 cut(s) 599
AfaI GTAC 1 cut(s) 554
AgsI TTSAA 3 cut(s) 229, 517, 527
AjnI CCWGG 2 cut(s) 163, 532
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 4 cut(s) 16, 245, 404, 439
AluI AGCT 4 cut(s) 16, 245, 404, 439
Alw26I GTCTC 2 cut(s) 66, 457
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 3 cut(s) 9, 300, 583
ApoI RAATTY 1 cut(s) 599
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AspS9I GGNCC 3 cut(s) 22, 419, 584
AvaII GGWCC 2 cut(s) 22, 419
BccI CCATC 3 cut(s) 96, 549, 561
BciT130I CCWGG 2 cut(s) 165, 534
BcoDI GTCTC 2 cut(s) 66, 457
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 165, 534
Bme18I GGWCC 2 cut(s) 22, 419
BmgT120I GGNCC 3 cut(s) 22, 419, 584
BmrFI CCNGG 2 cut(s) 165, 534
BmsI GCATC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 291
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bse1I ACTGG 2 cut(s) 336, 501
BseBI CCWGG 2 cut(s) 165, 534
BseGI GGATG 1 cut(s) 542
BseNI ACTGG 2 cut(s) 336, 501
BseRI GAGGAG 2 cut(s) 126, 475
BshFI GGCC 3 cut(s) 11, 302, 585
BsmAI GTCTC 2 cut(s) 66, 457
BsnI GGCC 3 cut(s) 11, 302, 585
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 2 cut(s) 303, 428
BspANI GGCC 3 cut(s) 11, 302, 585
BsrBI CCGCTC 1 cut(s) 305
BsrI ACTGG 2 cut(s) 336, 501
BssMI GATC 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 165, 534
Bst4CI ACNGT 4 cut(s) 238, 415, 451, 552
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 542
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 2 cut(s) 66, 457
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 2 cut(s) 165, 534
BstSCI CCNGG 2 cut(s) 163, 532
BstXI CCANNNNNNTGG 2 cut(s) 19, 508
BsuRI GGCC 3 cut(s) 11, 302, 585
BtsCI GGATG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 22, 419, 584
Csp6I GTAC 1 cut(s) 553
CviAII CATG 2 cut(s) 118, 492
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco47I GGWCC 2 cut(s) 22, 419
EcoRII CCWGG 2 cut(s) 163, 532
EcoT22I ATGCAT 1 cut(s) 497
FaeI CATG 2 cut(s) 121, 495
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FatI CATG 2 cut(s) 117, 491
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 549
Fsp4HI GCNGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 3 cut(s) 11, 302, 585
Hin1II CATG 2 cut(s) 121, 495
HindIII AAGCTT 2 cut(s) 14, 437
HinfI GANTC 2 cut(s) 168, 251
Hpy188I TCNGA 3 cut(s) 33, 289, 597
Hpy188III TCNNGA 3 cut(s) 62, 172, 248
HpyAV CCTTC 3 cut(s) 59, 292, 597
HpyCH4III ACNGT 4 cut(s) 238, 415, 451, 552
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 117, 472, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 121, 495
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 250
LweI GCATC 1 cut(s) 527
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 570
MalI GATC 1 cut(s) 60
MbiI CCGCTC 1 cut(s) 305
MboI GATC 1 cut(s) 58
MfeI CAATTG 1 cut(s) 209
MluCI AATT 5 cut(s) 53, 209, 318, 517, 599
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 164
MnlI CCTC 5 cut(s) 144, 147, 370, 432, 453
Mph1103I ATGCAT 1 cut(s) 497
MseI TTAA 1 cut(s) 604
MslI CAYNNNNRTG 1 cut(s) 535
MspR9I CCNGG 2 cut(s) 165, 534
MunI CAATTG 1 cut(s) 209
MvaI CCWGG 2 cut(s) 165, 534
MwoI GCNNNNNNNGC 1 cut(s) 436
NdeII GATC 1 cut(s) 58
NlaIII CATG 2 cut(s) 121, 495
NmuCI GTSAC 1 cut(s) 570
NsiI ATGCAT 1 cut(s) 497
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 163, 532
PspGI CCWGG 2 cut(s) 163, 532
PspPI GGNCC 3 cut(s) 22, 419, 584
PstNI CAGNNNCTG 1 cut(s) 254
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 535
SaqAI TTAA 1 cut(s) 604
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 3 cut(s) 22, 419, 584
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 165, 534
SetI ASST 8 cut(s) 18, 70, 81, 136, 247, 406, 441, 535
SfaNI GCATC 1 cut(s) 527
SinI GGWCC 2 cut(s) 22, 419
SmiMI CAYNNNNRTG 1 cut(s) 535
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 5 cut(s) 53, 209, 318, 517, 599
SsiI CCGC 2 cut(s) 303, 428
SspI AATATT 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 163, 532
TaaI ACNGT 4 cut(s) 238, 415, 451, 552
TaiI ACGT 1 cut(s) 81
TasI AATT 5 cut(s) 53, 209, 318, 517, 599
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 604
Tru9I TTAA 1 cut(s) 604
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 570
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 2 cut(s) 266, 579
TspRI CASTG 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 22, 419
XapI RAATTY 1 cut(s) 599
Zsp2I ATGCAT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.