Rorug04G0431800

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002050
Physical Location & Seq
Forward (+)
59041122 .. 59046577
5456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0431800.1

Sequence Viewer

Length: 2799 bp
ATGGCCGACGATCCTCCTACTCCGGCGACGCAAGACCCGAATCCCCAATCCAAACAACCCGATCCCCCACCCGCTTCTACACCACCACCACCGCAACCGCAACCGCAACCATCATCCACCCCAATCCAATTAAACCCCAACCCCAATCCAAACAATCCGCCTCTAGTTTCTCTGCCGCCGCCGCCGCCGCAGCCGTCGGTCTCTTACGCCCCGCAACCGCTCTCCACCGCCTTCGCCGTTCCTCCGGCCGCGCCATCTTTCCGGCCGGTTCCTCAGTTCTCTCCATTACCGAATTATCAAACTCCCGGCGTCCCTCCGCCGGGTGTCAGCTCCGGGGCTCCGTTGCCGGTGCCGCAACATATGATGCATTATCAGATGCAACAGCCGATGAGACCCTACGCGCCAATGCCGAATGGCTACTCAGCTCCGCCGCAGGGCACCATTCCTCCGCCTGGACTTATTCGTTATCCCTCTCCATATCCTACAATGCTTCGACCTGGTTTTCCCTCACGGCCACTGGGAGGAATTGGTTTGCTTCCATCTGTACAGCGCGCTCCTATGCTGGGTATTCCTGGGGTTCGCCCCGTTATGCCTCCTGTTGTTAGGCCAGCTGTTCCTAGTGTTACTCCAGCTGAGAAACCACAAACAACCGTCTATGTTGGCAAGATAGCCCCAACAGTAAACAATGATTTTATGTTATATCTCCTTCAGTTATGTGGACCTGTCAAGAGTTGGAAGCGTGCTCAAGATCCCACAGATGGGACTCCTAGAGGCTTTGGATTTTGTGATTTTGAATCAGCTGAAGGGGTTCTTCGTGCATTACGCCTTCTGAGTAAATTCAACATCGATGGGCAGGAGCTGGTGTTAAATGTAAATCAAGCAACAAGAGAGTATCTAGAGCGGTTTGTTGAAAAGAAAACTGAAAATTCAAAGAAGCTGAAAGACACTCAAGCTGAGGGAGATGAGAAAGAGGGTGAGAGTAACGTTGATAAGACTGCAGTTCCAAATTCTGTTGTGGATTCAAAGGCGGAGGATAGTAATACAGGGAACAAAGAAAGCAACACTACGAACTTTGGGATTGTGACCGATGAAGACAAGGAAGCTGACAGGGTGGCCATGGAGAAGCTTACAAGCTTGATAGAGGAGAGATTAAAAACAAATCCTCTGCCTCCACCGCCTCCACTTGCTCCTGGTGATCGTACTGGGAATTCAATCTCAGAGCTTCCAGCTAAGTCAAGGGATGGAGACCTTGATGTGGATATAACAAGAAATGATGCTTCTGAAGAAAAAAATGATGAAGAGACAACTAGTGACAACAAAGCTGAAAGTGAGCAGGATAGGCCTGAAACAAGCTCACCTGAGAGGAGTAGAAAGCCTGATAAAAGTAGAGAAAGAGACAGAGAGCGAGATGTGAAACAGGAAAAGGAGCGTGAGATTGAAAGATATGAAAGAGAAACAGAGCGAGAACGGATAAGGAAGGAGAGAGAGCAGAGGAGGAGAATTGAGGACGCAGAACGCAAGTTTGAAGAATGTCTCAAAGATTGGGAGTATAGGGAAAGGGAGAAACAGAAACAGCGGCAATATGAAAAGGAGAGGGAGAAAGAACGGGAACGCAAACGGAAGAAAGATATAATTAATGAAGAAGATGATGAGGAAGAAGATTCTAGAAAAAGGTGGCGCAGGAATGCGTGGGAGGAGAAGAGGAAGAGGAGACAGAGGGAGAAGGAAGATGACTTGGCTGACAGATTAAGAGAAGAGGAAGAAATTGCTGAGGCCAACAGGAGGGCTGATCAGGAAAAGCAGCTACAGCAACTGAGAGATGCACTGAAGGCTTCATCTGACCATTTAGTGGATGGAAGAGAAACGGCAGATTTGGCTGAAGAATCCTGTGTGGAATCGAAAGATATGGCCATTAAACAGGACAATGAGACTGGTTCTGGTCCTGAGAACCATATAGGTGATGGGACTCTACAAAATGGTAACACTGGGGATGAATCAGCCAATACATCAGAACCCCAGCAGAGTGGGAGTGCCCCAGCCAAAAAGTTGGGTTTTGGTTTAGTTGGCTCTGGGAAACGTACTTCTGTTCCTTCTGTTTTCAACGAGGAAGATGATGATGCACACAAGGACAAAAAGATGAGGCCCCTGGTCCCTATTGACTATTCAACTGAAGAACTACAGGCTGTCGAACCGGTTGCTTCTGGGCAAGCGCCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAGCGAATATCAAATGTTGGTTCTAAAGAAGAGAAGCACGATGCAGAGAAGGAGAGAAATAGACGTGCCAATGATAGGTCGAGTCAACGGGACAGGGATAGGAATGATGATGACACTAACCGCACTAGAGATGAGAACAAGGAGAAGACTGTTGACCGTGATACAGACCGGGAACATGGGCGGGATAAACCAAGGACAACAGATAATAAGAAGCTTTTGGACGCAAAACAACTGATTGATATGATTCCAAGGACCAAAGAGGAGTTATTCTCATATGAAATAAATTGGGCTATTTATGAAAAGCATGCACTTCATGAGAGAATGAAACCATGGATTTCAAAGAAGATTACAGAGTTTCTTGGAGAGGAAGAAACCACACTGGTAGATTATATTGTATCTAGTACTCAAGAACATGTGGGAGCAGAACGCATGCTACAGCTGCTTCAATCCATTTTAGACGAGGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTAGAGACAGGCTTACCTTCAAAAACAAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

932

Amino Acids

105.6

Weight (kDa)

5.27

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 218 - 287 2.4e-08 RNA recognition motif
PWI PF01480 855 - 918 1.1e-13 PWI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 349, 437
AccB7I CCANNNNNTGG 1 cut(s) 1849
AccBSI CCGCTC 2 cut(s) 220, 901
AccII CGCG 3 cut(s) 251, 401, 552
AclI AACGTT 1 cut(s) 984
AclWI GGATC 3 cut(s) 5, 56, 743
AcoI YGGCCR 6 cut(s) 3, 246, 263, 512, 1113, 1908
AcsI RAATTY 6 cut(s) 836, 925, 1006, 1207, 2218, 2237
AcuI CTGAAG 6 cut(s) 692, 822, 1302, 1847, 1899, 2190
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 4 cut(s) 546, 1201, 2080, 2647
AflIII ACRYGT 1 cut(s) 2656
AgeI ACCGGT 1 cut(s) 2191
AhlI ACTAGT 1 cut(s) 1307
AjiI CACGTC 1 cut(s) 2309
AjnI CCWGG 5 cut(s) 451, 496, 571, 1189, 2145
Alw21I GWGCWC 1 cut(s) 745
Alw26I GTCTC 9 cut(s) 205, 385, 1239, 1295, 1389, 1538, 1705, 1922, 2762
AlwI GGATC 3 cut(s) 5, 56, 743
AlwNI CAGNNNCTG 2 cut(s) 859, 1813
ApeKI GCWGC 6 cut(s) 190, 1801, 2225, 2228, 2231, 2683
ApoI RAATTY 6 cut(s) 836, 925, 1006, 1207, 2218, 2237
AseI ATTAAT 1 cut(s) 1635
AsiGI ACCGGT 1 cut(s) 2191
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 6 cut(s) 253, 403, 552, 554, 1680, 2212
AspS9I GGNCC 5 cut(s) 719, 1940, 2142, 2149, 2496
AsuC2I CCSGG 4 cut(s) 306, 321, 334, 2414
AsuHPI GGTGA 4 cut(s) 986, 1205, 1347, 1970
AvaII GGWCC 4 cut(s) 719, 1940, 2149, 2496
BaeGI GKGCMC 2 cut(s) 440, 2035
BalI TGGCCA 2 cut(s) 1115, 1910
BanI GGYRCC 2 cut(s) 349, 437
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 1098, 2396
Bbv12I GWGCWC 1 cut(s) 745
BbvCI CCTCAGC 2 cut(s) 954, 1770
BbvI GCAGC 6 cut(s) 202, 1813, 2212, 2218, 2240, 2670
BccI CCATC 8 cut(s) 118, 262, 547, 752, 842, 1235, 1847, 1955
BceAI ACGGC 4 cut(s) 178, 221, 527, 1881
BcgI CGANNNNNNTGC 2 cut(s) 2177, 2211
BciT130I CCWGG 5 cut(s) 453, 498, 573, 1191, 2147
BclI TGATCA 1 cut(s) 1789
BcnI CCSGG 4 cut(s) 306, 321, 334, 2414
BcoDI GTCTC 9 cut(s) 205, 385, 1239, 1295, 1389, 1538, 1705, 1922, 2762
BcuI ACTAGT 1 cut(s) 1307
BfaI CTAG 8 cut(s) 164, 618, 768, 896, 1308, 1665, 2370, 2643
BfmI CTRYAG 6 cut(s) 996, 1805, 2177, 2226, 2232, 2678
BfoI RGCGCY 1 cut(s) 2213
BmcAI AGTACT 1 cut(s) 2647
Bme1390I CCNGG 9 cut(s) 306, 321, 334, 453, 498, 573, 1191, 2147, 2414
Bme18I GGWCC 4 cut(s) 719, 1940, 2149, 2496
BmgBI CACGTC 1 cut(s) 2309
BmgT120I GGNCC 5 cut(s) 719, 1940, 2142, 2149, 2496
BmiI GGNNCC 6 cut(s) 270, 339, 351, 439, 2144, 2151
BmrFI CCNGG 9 cut(s) 306, 321, 334, 453, 498, 573, 1191, 2147, 2414
BmrI ACTGGG 3 cut(s) 527, 1212, 1995
BmsI GCATC 7 cut(s) 354, 366, 1264, 1810, 2107, 2275, 2730
BmuI ACTGGG 3 cut(s) 527, 1212, 1995
BpiI GAAGAC 2 cut(s) 1098, 2396
BplI GAGNNNNNCTC 2 cut(s) 2498, 2530
BpmI CTGGAG 1 cut(s) 612
Bpu10I CCTNAGC 2 cut(s) 954, 1770
BpuEI CTTGAG 4 cut(s) 729, 933, 2634, 2711
BpuMI CCSGG 4 cut(s) 306, 321, 334, 2414
Bsa29I ATCGAT 1 cut(s) 846
BsaBI GATNNNNATC 1 cut(s) 2744
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 3 cut(s) 205, 385, 1239
BsaJI CCNNGG 7 cut(s) 333, 572, 1116, 2145, 2435, 2492, 2573
BsaWI WCCGGW 1 cut(s) 2191
BsaXI ACNNNNNCTCC 4 cut(s) 430, 460, 848, 878
Bse118I RCCGGY 3 cut(s) 265, 346, 2191
Bse1I ACTGG 5 cut(s) 522, 1207, 1936, 1990, 2628
Bse8I GATNNNNATC 1 cut(s) 2744
BseBI CCWGG 5 cut(s) 453, 498, 573, 1191, 2147
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 7 cut(s) 333, 572, 1116, 2145, 2435, 2492, 2573
BseGI GGATG 5 cut(s) 113, 1246, 1858, 1996, 2745
BseJI GATNNNNATC 1 cut(s) 2744
BseNI ACTGG 5 cut(s) 522, 1207, 1936, 1990, 2628
BsePI GCGCGC 1 cut(s) 550
BseRI GAGGAG 7 cut(s) 1157, 1378, 1507, 1510, 1709, 1723, 2519
BseSI GKGCMC 2 cut(s) 440, 2035
BseX3I CGGCCG 2 cut(s) 246, 263
BseXI GCAGC 6 cut(s) 202, 1813, 2212, 2218, 2240, 2670
BseYI CCCAGC 3 cut(s) 562, 2016, 2035
Bsh1236I CGCG 3 cut(s) 251, 401, 552
Bsh1285I CGRYCG 2 cut(s) 249, 266
BshNI GGYRCC 2 cut(s) 349, 437
BshTI ACCGGT 1 cut(s) 2191
BshVI ATCGAT 1 cut(s) 846
BsiEI CGRYCG 2 cut(s) 249, 266
BsiHKAI GWGCWC 1 cut(s) 745
BslFI GGGAC 5 cut(s) 296, 775, 1978, 2135, 2348
BsmAI GTCTC 9 cut(s) 205, 385, 1239, 1295, 1389, 1538, 1705, 1922, 2762
BsmFI GGGAC 5 cut(s) 296, 775, 1978, 2135, 2348
BsmI GAATGC 1 cut(s) 1690
Bso31I GGTCTC 3 cut(s) 205, 385, 1239
Bsp1286I GDGCHC 4 cut(s) 340, 440, 745, 2035
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
Bsp19I CCATGG 2 cut(s) 1116, 2573
BspDI ATCGAT 1 cut(s) 846
BspFNI CGCG 3 cut(s) 251, 401, 552
BspHI TCATGA 2 cut(s) 2557, 2795
BspLI GGNNCC 6 cut(s) 270, 339, 351, 439, 2144, 2151
BspMAI CTGCAG 3 cut(s) 1000, 2230, 2236
BspPI GGATC 3 cut(s) 5, 56, 743
BspT107I GGYRCC 2 cut(s) 349, 437
BspTNI GGTCTC 3 cut(s) 205, 385, 1239
BsrBI CCGCTC 2 cut(s) 220, 901
BsrFI RCCGGY 3 cut(s) 265, 346, 2191
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 5 cut(s) 522, 1207, 1936, 1990, 2628
BssAI RCCGGY 3 cut(s) 265, 346, 2191
BssECI CCNNGG 7 cut(s) 333, 572, 1116, 2145, 2435, 2492, 2573
BssHII GCGCGC 1 cut(s) 550
BssMI GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 4 cut(s) 1116, 2435, 2492, 2573
Bst2UI CCWGG 5 cut(s) 453, 498, 573, 1191, 2147
Bst4CI ACNGT 4 cut(s) 652, 679, 2395, 2402
Bst6I CTCTTC 6 cut(s) 1293, 1694, 1700, 1749, 1852, 2268
BstACI GRCGYC 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 2240
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 6 cut(s) 552, 609, 741, 2208, 2550, 2675
BstDSI CCRYGG 2 cut(s) 1116, 2573
BstF5I GGATG 5 cut(s) 113, 1246, 1858, 1996, 2745
BstFNI CGCG 3 cut(s) 251, 401, 552
BstH2I RGCGCY 1 cut(s) 2213
BstHHI GCGC 6 cut(s) 253, 403, 552, 554, 1680, 2212
BstKTI GATC 6 cut(s) 13, 64, 751, 1198, 1792, 2795
BstMAI GTCTC 9 cut(s) 205, 385, 1239, 1295, 1389, 1538, 1705, 1922, 2762
BstMBI GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
BstMCI CGRYCG 2 cut(s) 249, 266
BstNI CCWGG 5 cut(s) 453, 498, 573, 1191, 2147
BstNSI RCATGY 3 cut(s) 2552, 2660, 2677
BstSCI CCNGG 9 cut(s) 304, 319, 332, 451, 496, 571, 1189, 2145, 2412
BstSFI CTRYAG 6 cut(s) 996, 1805, 2177, 2226, 2232, 2678
BstSLI GKGCMC 2 cut(s) 440, 2035
BstUI CGCG 3 cut(s) 251, 401, 552
BstV1I GCAGC 6 cut(s) 202, 1813, 2212, 2218, 2240, 2670
BstV2I GAAGAC 2 cut(s) 1098, 2396
BstX2I RGATCY 1 cut(s) 748
BstXI CCANNNNNNTGG 2 cut(s) 2024, 2047
BstYI RGATCY 1 cut(s) 748
BstZI CGGCCG 2 cut(s) 246, 263
Bsu15I ATCGAT 1 cut(s) 846
BsuTUI ATCGAT 1 cut(s) 846
BtgI CCRYGG 2 cut(s) 1116, 2573
BtrI CACGTC 1 cut(s) 2309
BtsCI GGATG 5 cut(s) 113, 1246, 1858, 1996, 2745
BtsIMutI CAGTG 4 cut(s) 515, 1823, 1983, 2621
Cac8I GCNNGC 6 cut(s) 552, 609, 741, 2208, 2550, 2675
CaiI CAGNNNCTG 2 cut(s) 859, 1813
CciI TCATGA 2 cut(s) 2557, 2795
CfoI GCGC 6 cut(s) 253, 403, 552, 554, 1680, 2212
Cfr10I RCCGGY 3 cut(s) 265, 346, 2191
Cfr13I GGNCC 5 cut(s) 719, 1940, 2142, 2149, 2496
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 4 cut(s) 37, 298, 1517, 2474
CsiI ACCWGGT 1 cut(s) 496
Csp6I GTAC 4 cut(s) 545, 1200, 2079, 2646
CspAI ACCGGT 1 cut(s) 2191
CspCI CAANNNNNGTGG 2 cut(s) 2202, 2237
CviAII CATG 8 cut(s) 1117, 2420, 2549, 2558, 2574, 2657, 2674, 2796
CviQI GTAC 4 cut(s) 545, 1200, 2079, 2646
DpnI GATC 6 cut(s) 12, 63, 750, 1197, 1791, 2794
DpnII GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
EaeI YGGCCR 6 cut(s) 3, 246, 263, 512, 1113, 1908
EagI CGGCCG 2 cut(s) 246, 263
Eam1104I CTCTTC 6 cut(s) 1293, 1694, 1700, 1749, 1852, 2268
EarI CTCTTC 6 cut(s) 1293, 1694, 1700, 1749, 1852, 2268
EciI GGCGGA 5 cut(s) 147, 306, 417, 438, 1043
EclXI CGGCCG 2 cut(s) 246, 263
Eco130I CCWWGG 4 cut(s) 1116, 2435, 2492, 2573
Eco147I AGGCCT 1 cut(s) 1342
Eco24I GRGCYC 1 cut(s) 340
Eco31I GGTCTC 3 cut(s) 205, 385, 1239
Eco47I GGWCC 4 cut(s) 719, 1940, 2149, 2496
Eco52I CGGCCG 2 cut(s) 246, 263
Eco57I CTGAAG 6 cut(s) 692, 822, 1302, 1847, 1899, 2190
EcoO109I RGGNCCY 1 cut(s) 2142
EcoRI GAATTC 1 cut(s) 1207
EcoRII CCWGG 5 cut(s) 451, 496, 571, 1189, 2145
EcoT14I CCWWGG 4 cut(s) 1116, 2435, 2492, 2573
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 4 cut(s) 1116, 2435, 2492, 2573
FaeI CATG 8 cut(s) 1120, 2423, 2552, 2561, 2577, 2660, 2677, 2799
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 5 cut(s) 296, 775, 1978, 2135, 2348
FatI CATG 8 cut(s) 1116, 2419, 2548, 2557, 2573, 2656, 2673, 2795
FauI CCCGC 3 cut(s) 79, 219, 2418
FauNDI CATATG 2 cut(s) 360, 2518
FbaI TGATCA 1 cut(s) 1789
FokI GGATG 5 cut(s) 100, 1253, 1865, 2003, 2752
FriOI GRGCYC 1 cut(s) 340
FspBI CTAG 8 cut(s) 164, 618, 768, 896, 1308, 1665, 2370, 2643
GlaI GCGC 6 cut(s) 252, 402, 551, 553, 1679, 2211
GsaI CCCAGC 3 cut(s) 566, 2020, 2039
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 1 cut(s) 2213
HgaI GACGC 4 cut(s) 37, 298, 1517, 2474
HhaI GCGC 6 cut(s) 253, 403, 552, 554, 1680, 2212
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 8 cut(s) 1120, 2423, 2552, 2561, 2577, 2660, 2677, 2799
Hin6I GCGC 6 cut(s) 251, 401, 550, 552, 1678, 2210
HinP1I GCGC 6 cut(s) 251, 401, 550, 552, 1678, 2210
HincII GTYRAC 2 cut(s) 2330, 2398
HindII GTYRAC 2 cut(s) 2330, 2398
HindIII AAGCTT 3 cut(s) 1124, 1132, 2456
HphI GGTGA 4 cut(s) 986, 1205, 1347, 1970
Hpy166II GTNNAC 4 cut(s) 682, 719, 2330, 2398
Hpy188I TCNGA 6 cut(s) 375, 831, 1219, 1282, 1840, 2011
Hpy8I GTNNAC 4 cut(s) 682, 719, 2330, 2398
Hpy99I CGWCG 3 cut(s) 11, 31, 199
HpyCH4III ACNGT 4 cut(s) 652, 679, 2395, 2402
HpyCH4IV ACGT 3 cut(s) 984, 2077, 2308
HpySE526I ACGT 3 cut(s) 984, 2077, 2308
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 8 cut(s) 1120, 2423, 2552, 2561, 2577, 2660, 2677, 2799
HspAI GCGC 6 cut(s) 251, 401, 550, 552, 1678, 2210
Ksp22I TGATCA 1 cut(s) 1789
Kzo9I GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
LmnI GCTCC 8 cut(s) 335, 343, 430, 559, 856, 1192, 1426, 2663
Lsp1109I GCAGC 6 cut(s) 202, 1813, 2212, 2218, 2240, 2670
LweI GCATC 7 cut(s) 354, 366, 1264, 1810, 2107, 2275, 2730
MabI ACCWGGT 1 cut(s) 496
MaeI CTAG 8 cut(s) 164, 618, 768, 896, 1308, 1665, 2370, 2643
MaeII ACGT 3 cut(s) 984, 2077, 2308
MaeIII GTNAC 5 cut(s) 622, 980, 1081, 1310, 1979
MalI GATC 6 cut(s) 12, 63, 750, 1197, 1791, 2794
MbiI CCGCTC 2 cut(s) 220, 901
MboI GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
MflI RGATCY 1 cut(s) 748
MhlI GDGCHC 4 cut(s) 340, 440, 745, 2035
MlsI TGGCCA 2 cut(s) 1115, 1910
MluNI TGGCCA 2 cut(s) 1115, 1910
MlyI GAGTC 3 cut(s) 757, 1960, 2335
MmeI TCCRAC 1 cut(s) 713
Mox20I TGGCCA 2 cut(s) 1115, 1910
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 1 cut(s) 807
MscI TGGCCA 2 cut(s) 1115, 1910
MseI TTAA 7 cut(s) 131, 866, 1151, 1635, 1748, 1914, 2757
MslI CAYNNNNRTG 1 cut(s) 1956
Msp20I TGGCCA 2 cut(s) 1115, 1910
MspA1I CMGCKG 6 cut(s) 611, 632, 800, 1576, 2231, 2683
MspR9I CCNGG 9 cut(s) 306, 321, 334, 453, 498, 573, 1191, 2147, 2414
Mva1269I GAATGC 1 cut(s) 1690
MvaI CCWGG 5 cut(s) 453, 498, 573, 1191, 2147
MvnI CGCG 3 cut(s) 251, 401, 552
NciI CCSGG 4 cut(s) 306, 321, 334, 2414
NcoI CCATGG 2 cut(s) 1116, 2573
NdeI CATATG 2 cut(s) 360, 2518
NdeII GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
NlaIII CATG 8 cut(s) 1120, 2423, 2552, 2561, 2577, 2660, 2677, 2799
NlaIV GGNNCC 6 cut(s) 270, 339, 351, 439, 2144, 2151
NmuCI GTSAC 2 cut(s) 1081, 1310
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 3 cut(s) 2552, 2660, 2677
PaeI GCATGC 2 cut(s) 2552, 2677
PagI TCATGA 2 cut(s) 2557, 2795
PauI GCGCGC 1 cut(s) 550
PceI AGGCCT 1 cut(s) 1342
PciI ACATGT 1 cut(s) 2656
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PctI GAATGC 1 cut(s) 1690
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 8 cut(s) 40, 794, 1019, 1661, 1883, 1895, 1994, 2488
PflMI CCANNNNNTGG 1 cut(s) 1849
PinAI ACCGGT 1 cut(s) 2191
PleI GAGTC 3 cut(s) 757, 1960, 2334
PpsI GAGTC 3 cut(s) 757, 1960, 2334
PscI ACATGT 1 cut(s) 2656
PshBI ATTAAT 1 cut(s) 1635
Psp1406I AACGTT 1 cut(s) 984
Psp6I CCWGG 5 cut(s) 451, 496, 571, 1189, 2145
PspFI CCCAGC 3 cut(s) 562, 2016, 2035
PspGI CCWGG 5 cut(s) 451, 496, 571, 1189, 2145
PspN4I GGNNCC 6 cut(s) 270, 339, 351, 439, 2144, 2151
PspPI GGNCC 5 cut(s) 719, 1940, 2142, 2149, 2496
PsrI GAACNNNNNNTAC 2 cut(s) 2661, 2693
PstI CTGCAG 3 cut(s) 1000, 2230, 2236
PstNI CAGNNNCTG 2 cut(s) 859, 1813
PsuI RGATCY 1 cut(s) 748
PteI GCGCGC 1 cut(s) 550
PvuII CAGCTG 5 cut(s) 611, 632, 800, 2231, 2683
RsaI GTAC 4 cut(s) 546, 1201, 2080, 2647
RsaNI GTAC 4 cut(s) 545, 1200, 2079, 2646
RseI CAYNNNNRTG 1 cut(s) 1956
SaqAI TTAA 7 cut(s) 131, 866, 1151, 1635, 1748, 1914, 2757
Sau3AI GATC 6 cut(s) 10, 61, 748, 1195, 1789, 2792
Sau96I GGNCC 5 cut(s) 719, 1940, 2142, 2149, 2496
ScaI AGTACT 1 cut(s) 2647
SchI GAGTC 3 cut(s) 757, 1960, 2335
ScrFI CCNGG 9 cut(s) 306, 321, 334, 453, 498, 573, 1191, 2147, 2414
SduI GDGCHC 4 cut(s) 340, 440, 745, 2035
SexAI ACCWGGT 1 cut(s) 496
SfaNI GCATC 7 cut(s) 354, 366, 1264, 1810, 2107, 2275, 2730
SfcI CTRYAG 6 cut(s) 996, 1805, 2177, 2226, 2232, 2678
SinI GGWCC 4 cut(s) 719, 1940, 2149, 2496
SmiMI CAYNNNNRTG 1 cut(s) 1956
SmlI CTYRAG 4 cut(s) 744, 948, 2649, 2726
SmoI CTYRAG 4 cut(s) 744, 948, 2649, 2726
SpeI ACTAGT 1 cut(s) 1307
SphI GCATGC 2 cut(s) 2552, 2677
SseBI AGGCCT 1 cut(s) 1342
SspMI CTAG 8 cut(s) 164, 618, 768, 896, 1308, 1665, 2370, 2643
StuI AGGCCT 1 cut(s) 1342
StyD4I CCNGG 9 cut(s) 304, 319, 332, 451, 496, 571, 1189, 2145, 2412
StyI CCWWGG 4 cut(s) 1116, 2435, 2492, 2573
TaaI ACNGT 4 cut(s) 652, 679, 2395, 2402
TaiI ACGT 3 cut(s) 987, 2080, 2311
TaqI TCGA 5 cut(s) 493, 846, 1898, 2187, 2324
TaqII GACCGA 2 cut(s) 187, 1100
TatI WGTACW 2 cut(s) 544, 2645
TauI GCSGC 9 cut(s) 178, 181, 184, 187, 190, 251, 355, 433, 1579
TfiI GAWTC 8 cut(s) 40, 794, 1019, 1661, 1883, 1895, 1994, 2488
Tru1I TTAA 7 cut(s) 131, 866, 1151, 1635, 1748, 1914, 2757
Tru9I TTAA 7 cut(s) 131, 866, 1151, 1635, 1748, 1914, 2757
TscAI CASTG 4 cut(s) 522, 1830, 1990, 2628
TseFI GTSAC 2 cut(s) 1081, 1310
TseI GCWGC 6 cut(s) 190, 1801, 2225, 2228, 2231, 2683
Tsp45I GTSAC 2 cut(s) 1081, 1310
TspGWI ACGGA 3 cut(s) 330, 1483, 1633
TspRI CASTG 4 cut(s) 522, 1830, 1990, 2628
Van91I CCANNNNNTGG 1 cut(s) 1849
VpaK11BI GGWCC 4 cut(s) 719, 1940, 2149, 2496
VspI ATTAAT 1 cut(s) 1635
XapI RAATTY 6 cut(s) 836, 925, 1006, 1207, 2218, 2237
XbaI TCTAGA 2 cut(s) 895, 1664
XceI RCATGY 3 cut(s) 2552, 2660, 2677
XcmI CCANNNNNNNNNTGG 2 cut(s) 1850, 1958
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 8 cut(s) 164, 618, 768, 896, 1308, 1665, 2370, 2643
ZrmI AGTACT 1 cut(s) 2647
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.