Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Reverse (-)

67337306 .. 67341741

Gene Structure 4436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATTAGTCTTATACCTCCTCCAACCATTCCACCCAATGTGAAGCCAGGAGTCCTGACTTCTCCAAAGTATTCTATTACGAGCAGGAAACAATTTCTTGCAAACCACTTCAAACTCACTGTGAAAGCTCCAGATTCTGTATTTTGCCAATATTCTGTTCATATTACTTCTGAAAACAAGAAGGCCGCTCAAGGCAAGGGAATTGGCAGAGAACTGGTTGATAGGCTCTATCAAACATATTCCTCTAAACTTGCTGATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTATATACAGTTGGTCCTCTGCCGCAGAACAAGCTTGACTTTACAGTTCCCCTGGAGGAGACATTTGCAAAGAGAGTGAAAAAGTGGAGCCTAACAATACGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

131

Amino Acids

14.81

Weight (kDa)

9.85

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	33 - 116	3.5e-16	N-terminal domain of argonaute

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	188
AciI	CCGC	2 cut(s)	186, 311
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	46, 339
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	3 cut(s)	128, 287, 322
AluI	AGCT	3 cut(s)	128, 287, 322
Alw26I	GTCTC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	48, 341
BcoDI	GTCTC	1 cut(s)	341
BisI	GCNGC	2 cut(s)	186, 311
BlsI	GCNGC	2 cut(s)	187, 312
Bme1390I	CCNGG	2 cut(s)	48, 341
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	2 cut(s)	48, 341
BpmI	CTGGAG	2 cut(s)	114, 362
BpuEI	CTTGAG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	48, 341
BseDI	CCNNGG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	2 cut(s)	9, 359
BshFI	GGCC	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	185
BspACI	CCGC	2 cut(s)	186, 311
BspANI	GGCC	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	377
BsrBI	CCGCTC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	48, 341
Bst4CI	ACNGT	3 cut(s)	121, 298, 334
BstBAI	YACGTR	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	2 cut(s)	48, 341
BstSCI	CCNGG	2 cut(s)	46, 339
BstSNI	TACGTA	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	390
CviJI	RGCY	7 cut(s)	46, 128, 185, 226, 287, 322, 378
CviKI_1	RGCY	7 cut(s)	46, 128, 185, 226, 287, 322, 378
CviQI	GTAC	1 cut(s)	390
Eco105I	TACGTA	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	46, 339
FaiI	YATR	6 cut(s)	14, 162, 238, 273, 292, 294
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
Fnu4HI	GCNGC	2 cut(s)	186, 311
Fsp4HI	GCNGC	2 cut(s)	186, 311
GluI	GCNGC	2 cut(s)	186, 311
GsuI	CTGGAG	2 cut(s)	114, 362
HaeIII	GGCC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	2 cut(s)	51, 134
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	55, 131
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	121, 298, 334
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	2 cut(s)	101, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpySE526I	ACGT	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	133, 375
LpnPI	CCDG	8 cut(s)	33, 60, 68, 70, 144, 200, 326, 353
MaeII	ACGT	1 cut(s)	388
MbiI	CCGCTC	1 cut(s)	188
MluCI	AATT	2 cut(s)	92, 201
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	5 cut(s)	27, 30, 253, 315, 337
MseI	TTAA	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	48, 341
MvaI	CCWGG	2 cut(s)	48, 341
MwoI	GCNNNNNNNGC	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	187, 312
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	46, 339
PspGI	CCWGG	2 cut(s)	46, 339
PspN4I	GGNNCC	1 cut(s)	377
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	394
SatI	GCNGC	2 cut(s)	186, 311
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	48, 341
SetI	ASST	5 cut(s)	19, 130, 289, 324, 391
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
SnaBI	TACGTA	1 cut(s)	389
Sse9I	AATT	2 cut(s)	92, 201
SsiI	CCGC	2 cut(s)	186, 311
SspI	AATATT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	46, 339
TaaI	ACNGT	3 cut(s)	121, 298, 334
TaiI	ACGT	1 cut(s)	391
TasI	AATT	2 cut(s)	92, 201
TauI	GCSGC	2 cut(s)	188, 313
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	394
Tru9I	TTAA	1 cut(s)	394
TscAI	CASTG	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.