RLG00000036779

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002050
Physical Location & Seq
Forward (+)
84416047 .. 84421664
5618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036779

Sequence Viewer

Length: 549 bp
ATGCAAACGATTATTTGTATTGTTCAGTTGCTGCTTTTCTTGGTCTGTATTGAGATTGGTCATTGTCTAGATATCAGTAACAGTGTGCAATCGGACTTTGAAAGTGCTTTGAACTTGGATCATAAAGGATGGTGGATGTGGCTGCTGCTGGTGCGGGGAACGCAAATTCTGTATTCTACCAATATTCTGTTCATATTACTTCTGAAAACAAGAAGGCCGCTCAAGGCAAGGGAATTGGCAGAAAACTGGTTGACAGGCTCTATCAAACATATTCTTCTAAACTTGCTAATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTATATACAGTTGGTCCTCTGCCGCAGAACAAGCTTGACTTTACAGTTCCCCTGGAGGAGACATTTGCAAAGAGGGAAAACCCTTAGTAAGGATCTGAGTTACAACACTCTTGAAGAGACCCATGCCCTGTTCTCAAAGCTCTCTATCAACAGTAGTTCCAAGGCCAGATCATTGTCCCTACACTTGATCAGAATCATGCTGAAAGCTATGAACGTATCCAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

21.19

Weight (kDa)

10.19

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 3 cut(s) 154, 218, 343
AclWI GGATC 2 cut(s) 126, 420
AcsI RAATTY 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 3 cut(s) 101, 112, 434
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 4 cut(s) 319, 354, 460, 527
AluI AGCT 4 cut(s) 319, 354, 460, 527
Alw26I GTCTC 2 cut(s) 373, 431
AlwI GGATC 2 cut(s) 126, 420
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 2 cut(s) 215, 483
ApeKI GCWGC 3 cut(s) 31, 142, 145
ApoI RAATTY 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 334
AvaII GGWCC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 18, 129, 132
BccI CCATC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 373
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 1 cut(s) 507
BcoDI GTCTC 2 cut(s) 373, 431
BfaI CTAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 547
BisI GCNGC 5 cut(s) 32, 143, 146, 218, 343
BlsI GCNGC 5 cut(s) 33, 144, 147, 219, 344
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmrFI CCNGG 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 371, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 1 cut(s) 251
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 371, 480
BseGI GGATG 2 cut(s) 134, 141
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 391
BseXI GCAGC 3 cut(s) 18, 129, 132
BshFI GGCC 2 cut(s) 217, 485
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 1 cut(s) 409
BsmAI GTCTC 2 cut(s) 373, 431
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 2 cut(s) 217, 485
Bso31I GGTCTC 1 cut(s) 431
Bsp143I GATC 4 cut(s) 118, 412, 488, 507
BspACI CCGC 3 cut(s) 154, 218, 343
BspANI GGCC 2 cut(s) 217, 485
BspCNI CTCAG 1 cut(s) 408
BspPI GGATC 2 cut(s) 126, 420
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 371, 480
BssMI GATC 4 cut(s) 118, 412, 488, 507
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 4 cut(s) 83, 330, 366, 473
Bst6I CTCTTC 1 cut(s) 429
BstDEI CTNAG 2 cut(s) 404, 416
BstENI CCTNNNNNAGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 134, 141
BstKTI GATC 4 cut(s) 121, 415, 491, 510
BstMAI GTCTC 2 cut(s) 373, 431
BstMBI GATC 4 cut(s) 118, 412, 488, 507
BstMWI GCNNNNNNNGC 3 cut(s) 151, 160, 351
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 18, 129, 132
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 2 cut(s) 217, 485
BtsCI GGATG 2 cut(s) 134, 141
BtsIMutI CAGTG 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 334
CviAII CATG 2 cut(s) 443, 517
CviJI RGCY 8 cut(s) 142, 217, 258, 319, 354, 460, 485, 527
CviKI_1 RGCY 8 cut(s) 142, 217, 258, 319, 354, 460, 485, 527
DdeI CTNAG 2 cut(s) 404, 416
DpnI GATC 4 cut(s) 120, 414, 490, 509
DpnII GATC 4 cut(s) 118, 412, 488, 507
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 431
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 371
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 2 cut(s) 446, 520
FaiI YATR 9 cut(s) 123, 194, 270, 305, 324, 326, 444, 518, 530
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 1 cut(s) 481
FatI CATG 2 cut(s) 442, 516
FauI CCCGC 1 cut(s) 147
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 5 cut(s) 32, 143, 146, 218, 343
FokI GGATG 2 cut(s) 141, 148
Fsp4HI GCNGC 5 cut(s) 32, 143, 146, 218, 343
FspBI CTAG 1 cut(s) 68
GluI GCNGC 5 cut(s) 32, 143, 146, 218, 343
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 2 cut(s) 217, 485
Hin1II CATG 2 cut(s) 446, 520
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 1 cut(s) 513
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 4 cut(s) 94, 204, 417, 512
Hpy188III TCNNGA 2 cut(s) 68, 431
Hpy8I GTNNAC 1 cut(s) 252
HpyAV CCTTC 1 cut(s) 207
HpyCH4III ACNGT 4 cut(s) 83, 330, 366, 473
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 3 cut(s) 4, 88, 388
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 160, 351
HpyF3I CTNAG 2 cut(s) 404, 416
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 2 cut(s) 446, 520
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 4 cut(s) 118, 412, 488, 507
LpnPI CCDG 7 cut(s) 134, 232, 240, 358, 385, 461, 499
Lsp1109I GCAGC 3 cut(s) 18, 129, 132
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 2 cut(s) 77, 419
MalI GATC 4 cut(s) 120, 414, 490, 509
MbiI CCGCTC 1 cut(s) 220
MboI GATC 4 cut(s) 118, 412, 488, 507
MboII GAAGA 2 cut(s) 266, 446
MflI RGATCY 1 cut(s) 412
MluCI AATT 2 cut(s) 165, 233
MnlI CCTC 3 cut(s) 347, 369, 386
MspR9I CCNGG 1 cut(s) 373
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 3 cut(s) 151, 160, 351
NdeII GATC 4 cut(s) 118, 412, 488, 507
NlaIII CATG 2 cut(s) 446, 520
PfeI GAWTC 1 cut(s) 513
PkrI GCNGC 5 cut(s) 33, 144, 147, 219, 344
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspPI GGNCC 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 412
SatI GCNGC 5 cut(s) 32, 143, 146, 218, 343
Sau3AI GATC 4 cut(s) 118, 412, 488, 507
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 373
SetI ASST 5 cut(s) 321, 356, 462, 529, 537
SinI GGWCC 1 cut(s) 334
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 2 cut(s) 165, 233
SsiI CCGC 3 cut(s) 154, 218, 343
SspI AATATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 4 cut(s) 83, 330, 366, 473
TaiI ACGT 1 cut(s) 537
TasI AATT 2 cut(s) 165, 233
TauI GCSGC 2 cut(s) 220, 345
TfiI GAWTC 1 cut(s) 513
TscAI CASTG 1 cut(s) 88
TseI GCWGC 3 cut(s) 31, 142, 145
TspDTI ATGAA 2 cut(s) 181, 545
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 334
XagI CCTNNNNNAGG 1 cut(s) 407
XapI RAATTY 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 67
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.