RchiOBHm_Chr5g0047891

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002050
Physical Location & Seq
Forward (+)
44444958 .. 44458934
13977 bp
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UTR
Exon/CDS
Intron
PRQ32574

Sequence Viewer

Length: 420 bp
ATGGTGGATGTGGCTGCTGCTGGTGTGGGGAACGCAAGTAAGGATCCAAATTTGATCCCACCACCTCCTCCAACCATTCCACCCAATGTGAAGCCAAGAGTCCTGACTTCTCCCAAGTATTCTATTACGAGTAGGAAACAATTGCTTGCGAACCACTTCAAACTCACTGCGAAAGCTCCAGATTTTGTATTCTACCAATATTCTGTTCATATTACTTCTGAAAACAAGAAGCCCGCTCAAGGCAAGGGAATTGGCAGAAAACTGGTTGACAGGCTCTATCAAACATATTCTTCTAAACTTGCTGATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTATATACAGCTGGTCCTCTGCCGCAAAACAAGCTTGACTTTACAGTTCCCCTGCAGGAGACATTTGCAAAGAGAAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

139

Amino Acids

15.47

Weight (kDa)

9.92

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 47 - 132 5e-18 N-terminal domain of argonaute
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 236
AciI CCGC 2 cut(s) 234, 359
AclWI GGATC 3 cut(s) 38, 49, 51
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 4 cut(s) 176, 335, 347, 370
AluI AGCT 4 cut(s) 176, 335, 347, 370
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 3 cut(s) 38, 49, 51
ApeKI GCWGC 2 cut(s) 14, 17
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 350
BamHI GGATCC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 4
BcoDI GTCTC 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 389
BisI GCNGC 3 cut(s) 15, 18, 359
BlsI GCNGC 3 cut(s) 16, 19, 360
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 389
Bsp143I GATC 2 cut(s) 43, 54
BspACI CCGC 2 cut(s) 234, 359
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 393
BspPI GGATC 3 cut(s) 38, 49, 51
BsrBI CCGCTC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 267
BssMI GATC 2 cut(s) 43, 54
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 147, 234
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 2 cut(s) 46, 57
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 2 cut(s) 43, 54
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 147, 234
Cfr13I GGNCC 1 cut(s) 350
CviJI RGCY 8 cut(s) 14, 94, 176, 232, 274, 335, 347, 370
CviKI_1 RGCY 8 cut(s) 14, 94, 176, 232, 274, 335, 347, 370
DpnI GATC 2 cut(s) 45, 56
DpnII GATC 2 cut(s) 43, 54
Eco47I GGWCC 1 cut(s) 350
FaiI YATR 5 cut(s) 210, 286, 321, 340, 342
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FauI CCCGC 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 15, 18, 359
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 15, 18, 359
GluI GCNGC 3 cut(s) 15, 18, 359
GsuI CTGGAG 1 cut(s) 162
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 103, 179
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 2 cut(s) 391, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 43, 54
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 6, 116, 192, 248, 256, 333, 377, 401
Lsp1109I GCAGC 1 cut(s) 4
MalI GATC 2 cut(s) 45, 56
MbiI CCGCTC 1 cut(s) 236
MboI GATC 2 cut(s) 43, 54
MboII GAAGA 1 cut(s) 282
MfeI CAATTG 1 cut(s) 140
MflI RGATCY 1 cut(s) 43
MluCI AATT 3 cut(s) 49, 140, 249
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 95
MnlI CCTC 3 cut(s) 75, 78, 363
MroXI GAANNNNTTC 1 cut(s) 155
MspA1I CMGCKG 1 cut(s) 347
MunI CAATTG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 2 cut(s) 43, 54
NlaIV GGNNCC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 16, 19, 360
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 350
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 347
SatI GCNGC 3 cut(s) 15, 18, 359
Sau3AI GATC 2 cut(s) 43, 54
Sau96I GGNCC 1 cut(s) 350
SbfI CCTGCAGG 1 cut(s) 393
SchI GAGTC 1 cut(s) 108
SdaI CCTGCAGG 1 cut(s) 393
SetI ASST 5 cut(s) 67, 178, 337, 349, 372
SfcI CTRYAG 1 cut(s) 389
SinI GGWCC 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse8387I CCTGCAGG 1 cut(s) 393
Sse9I AATT 3 cut(s) 49, 140, 249
SsiI CCGC 2 cut(s) 234, 359
SspI AATATT 1 cut(s) 200
TaaI ACNGT 1 cut(s) 382
TasI AATT 3 cut(s) 49, 140, 249
TauI GCSGC 1 cut(s) 361
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 14, 17
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.