RchiOBHm_Chr5g0060791

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
66002644 .. 66010311
7668 bp
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UTR
Exon/CDS
Intron
PRQ33722

Sequence Viewer

Length: 222 bp
ATGAAGAGGAGGCTGATGGTGTTTGGTGCTGTTGAATTGAGATTTTCTTTGAACAACAAAGATTTGGGGGTGAATTCAGCTTGCGTTAGAGTCAGTGCTGGATTTATTTTGGATTATTCTCTTTTGGTCCGACGAGTTTTCTCATCAGCAAACTACTCAGATAGAGCTGTATGGAATTTTGAATTATCTCGACCTTTTTTTCTTGTTCAGTGTTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.44

Weight (kDa)

10.04

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 73, 175
AgsI TTSAA 3 cut(s) 35, 52, 182
AluBI AGCT 2 cut(s) 80, 167
AluI AGCT 2 cut(s) 80, 167
ApoI RAATTY 2 cut(s) 73, 175
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 127
BccI CCATC 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 100, 215
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 127
CviJI RGCY 3 cut(s) 13, 80, 167
CviKI_1 RGCY 3 cut(s) 13, 80, 167
DdeI CTNAG 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 73
FaiI YATR 1 cut(s) 172
HinfI GANTC 1 cut(s) 90
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 131, 160
Hpy188III TCNNGA 1 cut(s) 189
Hpy99I CGWCG 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 157
LpnPI CCDG 1 cut(s) 84
MboII GAAGA 1 cut(s) 16
MluCI AATT 4 cut(s) 35, 73, 175, 182
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 1 cut(s) 3
MseI TTAA 1 cut(s) 216
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 99
SetI ASST 3 cut(s) 82, 169, 196
SgeI CNNG 5 cut(s) 93, 111, 146, 201, 215
SinI GGWCC 1 cut(s) 127
Sse9I AATT 4 cut(s) 35, 73, 175, 182
TaqI TCGA 1 cut(s) 190
TasI AATT 4 cut(s) 35, 73, 175, 182
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 100, 215
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 100, 215
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 73, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.