Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Forward (+)

28047996 .. 28048695

Gene Structure 700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0265300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCAGCTGTGATACGAAACAAGCACCTTGTTCTTGTGGCTTTCATCTTTCTTTGGTTCATCACTATGACAACTACTGAAGCACGAAGTTTGGGAGTGGCGCCAAGTAATTATAGATCTGATGAGAAGATCCATGATGACAACTTGAAACATGGGATCAAAGAAGATGATGGAGTAGTGCCAGATGAGAGTAATGATTTACTGGCTATGGATTACACTCCAGCAAGTAAAAAGCCTCCAATCCACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

83

Amino Acids

9.32

Weight (kDa)

5.69

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLV1-2	PF21529	11 - 83	3.3e-19	Gloven 1/2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	124, 164
AcuI	CTGAAG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AlwI	GGATC	2 cut(s)	124, 164
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	104
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	17
BshNI	GGYRCC	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	116, 129, 156
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	124, 164
BspT107I	GGYRCC	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	207
BssMI	GATC	3 cut(s)	116, 129, 156
BssNI	GRCGYC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	3 cut(s)	119, 132, 159
BstMBI	GATC	3 cut(s)	116, 129, 156
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	116, 129
BstYI	RGATCY	2 cut(s)	116, 129
CfoI	GCGC	1 cut(s)	103
CviAII	CATG	2 cut(s)	134, 152
CviJI	RGCY	4 cut(s)	8, 41, 206, 235
CviKI_1	RGCY	4 cut(s)	8, 41, 206, 235
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	3 cut(s)	118, 131, 158
DpnII	GATC	3 cut(s)	116, 129, 156
Eco57I	CTGAAG	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
FaeI	CATG	2 cut(s)	137, 155
FaiI	YATR	5 cut(s)	68, 114, 135, 153, 209
FatI	CATG	2 cut(s)	133, 151
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	204
HaeII	RGCGCY	1 cut(s)	104
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	137, 155
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	121
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	137, 155
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	116, 129, 156
LpnPI	CCDG	3 cut(s)	188, 195, 234
Lsp1109I	GCAGC	1 cut(s)	17
MalI	GATC	3 cut(s)	118, 131, 158
MboI	GATC	3 cut(s)	116, 129, 156
MboII	GAAGA	2 cut(s)	139, 176
MflI	RGATCY	2 cut(s)	116, 129
MluCI	AATT	2 cut(s)	109, 247
Mly113I	GGCGCC	1 cut(s)	101
MnlI	CCTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	250
MslI	CAYNNNNRTG	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	8
NarI	GGCGCC	1 cut(s)	101
NdeII	GATC	3 cut(s)	116, 129, 156
NlaIII	CATG	2 cut(s)	137, 155
NlaIV	GGNNCC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	7
PluTI	GGCGCC	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	116, 129
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	116, 129, 156
SetI	ASST	2 cut(s)	10, 30
SfoI	GGCGCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	109, 247
SspDI	GGCGCC	1 cut(s)	100
TasI	AATT	2 cut(s)	109, 247
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	34, 49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.