Rh2CG415700

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002050
Physical Location & Seq
Forward (+)
56793431 .. 56813950
20520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG415700.1

Sequence Viewer

Length: 492 bp
ATGGCCGTCAGCGACTCTGGTGGCAGGGGAAGCATGCTGGTGGATCATAAAGGATTGTGGATGTGGCTGCTGCTGGTGCGGGGAACGCAATATTCTATTACGAGTAGGAAACAATTGCTTGCAAACCACTTCAAACTCACTGTGAAAGCTCCAGATTCTCTATTCTACCAATATTCTGTTCATATTACTTCTGAAAACAAGAAGGCCGCTCAAGGCAAGGGAATTGGCAGAAAACTGGTTGACAGGCTCTATATCAAACATATTCTTCTAAACTTGCTAATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTATATACAGTTGGTCCTCTGCCGCAGAACAAGCTTGACTTTACAGTTCCCCTGGAGAAGACATTTGCAAAGAGACCACAATAAAGTTCCTTGGTTTGCTGAGTTCTCCTTTGGTTTGATCAAAGGCTGTGGTTTTGGTGGATTTCGACAGATTGAGGATTGCAGGTCAAGGAGCGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

163

Amino Acids

18.81

Weight (kDa)

10.39

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 465
AccBSI CCGCTC 2 cut(s) 209, 486
AciI CCGC 4 cut(s) 79, 207, 334, 486
AclWI GGATC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 362
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 3 cut(s) 149, 310, 345
AluI AGCT 3 cut(s) 149, 310, 345
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 1 cut(s) 51
AoxI GGCC 2 cut(s) 3, 204
ApeKI GCWGC 2 cut(s) 67, 70
AspS9I GGNCC 1 cut(s) 325
AvaII GGWCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 376
BbvI GCAGC 2 cut(s) 54, 57
BciT130I CCWGG 1 cut(s) 364
BclI TGATCA 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 465
BisI GCNGC 4 cut(s) 68, 71, 207, 334
BlsI GCNGC 4 cut(s) 69, 72, 208, 335
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 376
BpmI CTGGAG 2 cut(s) 135, 385
BpuEI CTTGAG 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 362, 401
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 362, 401
BseGI GGATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 240
BseXI GCAGC 2 cut(s) 54, 57
BshFI GGCC 2 cut(s) 5, 206
BsmAI GTCTC 1 cut(s) 378
BsnI GGCC 2 cut(s) 5, 206
Bso31I GGTCTC 1 cut(s) 378
Bsp143I GATC 2 cut(s) 43, 429
BspACI CCGC 4 cut(s) 79, 207, 334, 486
BspANI GGCC 2 cut(s) 5, 206
BspCNI CTCAG 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 465
BspPI GGATC 1 cut(s) 51
BspTNI GGTCTC 1 cut(s) 378
BsrBI CCGCTC 2 cut(s) 209, 486
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 362, 401
BssMI GATC 2 cut(s) 43, 429
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 3 cut(s) 142, 321, 357
BstC8I GCNNGC 2 cut(s) 35, 120
BstDEI CTNAG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 2 cut(s) 46, 432
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 2 cut(s) 43, 429
BstMWI GCNNNNNNNGC 4 cut(s) 30, 76, 85, 342
BstNI CCWGG 1 cut(s) 364
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 54, 57
BstV2I GAAGAC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 5, 206
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 465
Cac8I GCNNGC 2 cut(s) 35, 120
Cfr13I GGNCC 1 cut(s) 325
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 1 cut(s) 34
CviJI RGCY 8 cut(s) 5, 67, 149, 206, 247, 310, 345, 438
CviKI_1 RGCY 8 cut(s) 5, 67, 149, 206, 247, 310, 345, 438
DdeI CTNAG 1 cut(s) 411
DpnI GATC 2 cut(s) 45, 431
DpnII GATC 2 cut(s) 43, 429
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 401
Eco31I GGTCTC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 1 cut(s) 37
FaiI YATR 8 cut(s) 35, 48, 183, 252, 261, 296, 315, 317
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FatI CATG 1 cut(s) 33
FauI CCCGC 2 cut(s) 72, 479
FbaI TGATCA 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 68, 71, 207, 334
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 4 cut(s) 68, 71, 207, 334
GluI GCNGC 4 cut(s) 68, 71, 207, 334
GsuI CTGGAG 2 cut(s) 135, 385
HaeIII GGCC 2 cut(s) 5, 206
Hin1II CATG 1 cut(s) 37
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 2 cut(s) 14, 155
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 3 cut(s) 142, 321, 357
HpyCH4V TGCA 3 cut(s) 122, 379, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 76, 85, 342
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 2 cut(s) 43, 429
LmnI GCTCC 2 cut(s) 154, 483
Lsp1109I GCAGC 2 cut(s) 54, 57
MalI GATC 2 cut(s) 45, 431
MbiI CCGCTC 2 cut(s) 209, 486
MboI GATC 2 cut(s) 43, 429
MboII GAAGA 2 cut(s) 257, 381
MfeI CAATTG 1 cut(s) 113
MluCI AATT 2 cut(s) 113, 222
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 2 cut(s) 338, 460
MslI CAYNNNNRTG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 364
MwoI GCNNNNNNNGC 4 cut(s) 30, 76, 85, 342
NdeII GATC 2 cut(s) 43, 429
NlaIII CATG 1 cut(s) 37
NspI RCATGY 1 cut(s) 37
PaeI GCATGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 4 cut(s) 69, 72, 208, 335
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspPI GGNCC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 4 cut(s) 68, 71, 207, 334
Sau3AI GATC 2 cut(s) 43, 429
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 364
SetI ASST 4 cut(s) 151, 312, 347, 479
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SphI GCATGC 1 cut(s) 37
Sse9I AATT 2 cut(s) 113, 222
SsiI CCGC 4 cut(s) 79, 207, 334, 486
SspI AATATT 2 cut(s) 92, 173
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 3 cut(s) 142, 321, 357
TaqI TCGA 1 cut(s) 457
TasI AATT 2 cut(s) 113, 222
TauI GCSGC 2 cut(s) 209, 336
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 1 cut(s) 145
TseI GCWGC 2 cut(s) 67, 70
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 325
XceI RCATGY 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.