Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006392.1

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Forward (+)

15423 .. 18622

Gene Structure 3200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006392.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggcatactattcctcacaggttcatattacttctgaaaacaagaaggccgctcaaggcaagggaattggcagagaactggttgataggctctatcaaacatattcctctaaacttgctgataacaagtttgtgtatgataaagagaaagctctatatacagttggtcctctaccgcagaacaagcttgactttacagttcccctggaggagacatttgcaaagagctctcctcctcctccatcactttgcctcgtttatttcccaattgattttgatcgctggggatcaggtcggctgaagaacggactcggaaatggaaaggggatatttgatgatgttggcaacagtgacagtggtggctgtgttgggttgttgttgtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

128

Amino Acids

14.02

Weight (kDa)

7.65

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	2 cut(s)	51, 176
AclWI	GGATC	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	152, 187, 228
AluI	AGCT	3 cut(s)	152, 187, 228
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	295
AoxI	GGCC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	230
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	206
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	4 cut(s)	222, 224, 225, 228
BseYI	CCCAGC	1 cut(s)	282
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	277, 287
BspACI	CCGC	2 cut(s)	51, 176
BspANI	GGCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	277, 287
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	163, 199, 350, 356
BstKTI	GATC	2 cut(s)	280, 290
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	277, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	355, 361
Cfr13I	GGNCC	1 cut(s)	167
CviJI	RGCY	7 cut(s)	50, 91, 152, 187, 228, 298, 363
CviKI_1	RGCY	7 cut(s)	50, 91, 152, 187, 228, 298, 363
DpnI	GATC	2 cut(s)	279, 289
DpnII	GATC	2 cut(s)	277, 287
Ecl136II	GAGCTC	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	230
FaiI	YATR	6 cut(s)	7, 27, 103, 138, 157, 159
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
Fnu4HI	GCNGC	1 cut(s)	51
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	309
Hpy188I	TCNGA	2 cut(s)	37, 314
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	4 cut(s)	163, 199, 350, 356
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	277, 287
LpnPI	CCDG	6 cut(s)	5, 65, 191, 218, 268, 276
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	2 cut(s)	279, 289
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	277, 287
MboII	GAAGA	1 cut(s)	313
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	2 cut(s)	66, 267
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	8 cut(s)	25, 118, 180, 202, 243, 246, 249, 263
MspR9I	CCNGG	1 cut(s)	206
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	2 cut(s)	277, 287
NmuCI	GTSAC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	230
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	277, 287
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	5 cut(s)	24, 154, 189, 230, 295
SinI	GGWCC	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	66, 267
SsiI	CCGC	2 cut(s)	51, 176
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	163, 199, 350, 356
TasI	AATT	2 cut(s)	66, 267
TauI	GCSGC	1 cut(s)	53
TscAI	CASTG	2 cut(s)	355, 361
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	14
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	355, 361
VpaK11BI	GGWCC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.