Rorug03G0246800

aarF domain-containing protein kinase At1g71810

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
23110823 .. 23113225
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0246800.1

Sequence Viewer

Length: 1548 bp
ATGGAAACAGAGTTCCAAGGCTACATCATACTCTTCCTTGTTTGGCTAGTGTCCACAATCCTTGTCCGAACCATATTGGCCAAATTTCGGACCAATTCTCGCCTTCCACCAAGTCCAATGGCCTTACCAATCATTGGACACCTTCACCTCCTTGCCCCAATACCTCACCAAGCTCTTCACAAGCTATCAAACCGCCTTGGACCTTTAGTTCACATCTTTCTTGGATCTGTCCCTTGTGTAGTTGTTTCCTCCCCGGAAATGGCGAAAGAGTTCCTCAAGACTCATGAAGCTTCCTTCTCCAACAGACCACACATGGCTGCTGTTGACTATCTCACATATGGGTCAGCTGATTTTTCGTTTGCACCTTATGGACCCTACTGGAAATTCATGAAGAAACTCTGCATGTCTGAACTTCTCGGTGGAAGAACACTTGATCAGCTCCTTCCAGTGAGGCGTGAAGAGCTGGCGAGCTTCATAGATTTGATGCTAAGCAAGGCCAAGTCAAATGAGGCAGTTGATCTTGGAGCTGAGCTTATGAATGTAACCAACAATATCATATCGAGAATGCTTATGGGGCAGAGTTGTTCTGCGGACGAAAAAGAGGCTGATGAGGTCAGGAAGTTGGTCAAAGCTGTTGCTGAGCTTACAGGGAAGTTCAATTTGTCGGACTTCATTTGGTTTTGTAAGAACTTGGATTTGCAGGGATTTGGGAAAAGGCTTAAGGAAGTGCGTGACCAGTTCGACACTATGATGCAGAGGATCATAAAGGAGCACCAAGAGGCACGAAAGAAGAAGAAGGAAGTGGGTGAAAGTGATGATGATGTTAAAGATTTGCTTGACATTTTACTTGATATATCTGAAGATGAGACCTCAGAGATAAGACTGACCAGAGAAAACATAAAGGCCTTCATCCTGGACATATTTGCTGCTGGTACCGACACATCTGCAATTACAACAGAATGGGCACTAGCAGAGCTAATCAACCACCCAGATGTGATGAACAAAGCAAGACAAGAAATCAATACCATAGTCGGGAACAACAGATTAGTAAAAGAATCAGACATTGCAAACCTTCCTTACCTGCAAGCTATAGTGAAAGAGACACTAAGACTTCATCCAACAGGCCCATTAATTGTGAGAGAGTCAACTGAACCCTGCTCAATTGGGGGCTATGAGATTCCAGCAAAAACCAGATTATTTGTCAATGTGTGGGCTGTCAACAGAGACCCCAATCACTGGGAGAAGCCTCTGGAGTTTGAGCCAGAGAGATTTACACGCAATGAAGGTGATGGGAAGAGCCAACTAGATGTGAGAGGACAACATTTTCATTTGTTGCCATTTGGTAGTGGAAGAAGAGGTTGTCCTGGGACCTCACTTGCACTGCAGGTTGTGCAGACAATGCTCGCAGCTATGATTCAGTGCTTTGAATGGAAGGTACCTAATGGTACAGTTGACATGGAAGAGGGCCCTGGATTAACGCTTCCAAGGGCTCATCCCTTGGTTTGTGTTCCAGTTGCCAGGCTCAATCCTTTTCCATCTTTCGAATAA

Protein Analysis

515

Amino Acids

58.01

Weight (kDa)

6.11

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 36 - 502 1.2e-110 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1089, 1375
Acc65I GGTACC 2 cut(s) 932, 1435
AccB1I GGYRCC 2 cut(s) 932, 1435
AccB7I CCANNNNNTGG 2 cut(s) 134, 1236
AciI CCGC 2 cut(s) 193, 590
AclWI GGATC 2 cut(s) 232, 767
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 2 cut(s) 83, 383
AcuI CTGAAG 1 cut(s) 879
AfaI GTAC 3 cut(s) 934, 1437, 1447
AfiI CCNNNNNNNGG 5 cut(s) 87, 134, 259, 1032, 1236
AflII CTTAAG 1 cut(s) 719
AgsI TTSAA 2 cut(s) 658, 1427
AjnI CCWGG 4 cut(s) 912, 1363, 1468, 1517
AloI GAACNNNNNNTCC 3 cut(s) 28, 192, 224
Alw21I GWGCWC 1 cut(s) 774
Alw26I GTCTC 3 cut(s) 860, 1094, 1218
AlwI GGATC 2 cut(s) 232, 767
AoxI GGCC 6 cut(s) 78, 120, 495, 903, 1123, 1465
ApaI GGGCCC 1 cut(s) 1469
ApeKI GCWGC 3 cut(s) 317, 926, 1406
ApoI RAATTY 2 cut(s) 83, 383
AseI ATTAAT 1 cut(s) 1130
Asp700I GAANNNNTTC 1 cut(s) 269
Asp718I GGTACC 2 cut(s) 932, 1435
AspS9I GGNCC 7 cut(s) 90, 200, 371, 1124, 1368, 1465, 1466
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 4 cut(s) 137, 158, 818, 1298
AsuII TTCGAA 1 cut(s) 1542
AvaII GGWCC 4 cut(s) 90, 200, 371, 1368
BaeGI GKGCMC 2 cut(s) 967, 1469
BalI TGGCCA 1 cut(s) 80
BanI GGYRCC 2 cut(s) 932, 1435
BanII GRGCYC 2 cut(s) 1469, 1492
Bbv12I GWGCWC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 304, 913, 1418
BccI CCATC 2 cut(s) 1283, 1543
BcgI CGANNNNNNTGC 2 cut(s) 926, 960
BciT130I CCWGG 4 cut(s) 914, 1365, 1470, 1519
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 3 cut(s) 860, 1094, 1218
BfaI CTAG 3 cut(s) 47, 968, 1304
BfmI CTRYAG 2 cut(s) 1089, 1382
BfrI CTTAAG 1 cut(s) 719
BfuAI ACCTGC 2 cut(s) 1089, 1375
BisI GCNGC 3 cut(s) 318, 927, 1407
BlpI GCTNAGC 3 cut(s) 488, 528, 639
BlsI GCNGC 3 cut(s) 319, 928, 1408
Bme1390I CCNGG 5 cut(s) 254, 914, 1365, 1470, 1519
Bme18I GGWCC 4 cut(s) 90, 200, 371, 1368
BmgT120I GGNCC 7 cut(s) 90, 200, 371, 1124, 1368, 1465, 1466
BmiI GGNNCC 5 cut(s) 373, 934, 1369, 1437, 1467
BmrFI CCNGG 5 cut(s) 254, 914, 1365, 1470, 1519
BmrI ACTGGG 1 cut(s) 1246
BmsI GCATC 2 cut(s) 474, 741
BmuI ACTGGG 1 cut(s) 1246
BpmI CTGGAG 1 cut(s) 1271
Bpu1102I GCTNAGC 3 cut(s) 488, 528, 639
Bpu14I TTCGAA 1 cut(s) 1542
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 254
BsaI GGTCTC 2 cut(s) 860, 1218
BsaJI CCNNGG 7 cut(s) 16, 196, 252, 1364, 1468, 1484, 1497
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 134, 259, 1032, 1236
Bse1I ACTGG 5 cut(s) 383, 446, 736, 1241, 1511
Bse3DI GCAATG 2 cut(s) 1062, 1285
BseBI CCWGG 4 cut(s) 914, 1365, 1470, 1519
BseDI CCNNGG 7 cut(s) 16, 196, 252, 1364, 1468, 1484, 1497
BseGI GGATG 3 cut(s) 909, 1114, 1492
BseLI CCNNNNNNNGG 5 cut(s) 87, 134, 259, 1032, 1236
BseMI GCAATG 2 cut(s) 1062, 1285
BseMII CTCAG 3 cut(s) 519, 630, 885
BseNI ACTGG 5 cut(s) 383, 446, 736, 1241, 1511
BseSI GKGCMC 2 cut(s) 967, 1469
BseXI GCAGC 3 cut(s) 304, 913, 1418
BsgI GTGCAG 1 cut(s) 1412
BshFI GGCC 6 cut(s) 80, 122, 497, 905, 1125, 1467
BshNI GGYRCC 2 cut(s) 932, 1435
BsiHKAI GWGCWC 1 cut(s) 774
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 215, 1381
BslI CCNNNNNNNGG 5 cut(s) 87, 134, 259, 1032, 1236
BsmAI GTCTC 3 cut(s) 860, 1094, 1218
BsmFI GGGAC 2 cut(s) 215, 1381
BsmI GAATGC 1 cut(s) 570
BsnI GGCC 6 cut(s) 80, 122, 497, 905, 1125, 1467
Bso31I GGTCTC 2 cut(s) 860, 1218
Bsp119I TTCGAA 1 cut(s) 1542
Bsp120I GGGCCC 1 cut(s) 1465
Bsp1286I GDGCHC 4 cut(s) 774, 967, 1469, 1492
Bsp143I GATC 4 cut(s) 224, 433, 517, 759
Bsp1720I GCTNAGC 3 cut(s) 488, 528, 639
BspACI CCGC 2 cut(s) 193, 590
BspANI GGCC 6 cut(s) 80, 122, 497, 905, 1125, 1467
BspCNI CTCAG 3 cut(s) 520, 631, 884
BspHI TCATGA 2 cut(s) 283, 387
BspLI GGNNCC 5 cut(s) 373, 934, 1369, 1437, 1467
BspMAI CTGCAG 1 cut(s) 1386
BspMI ACCTGC 2 cut(s) 1089, 1375
BspPI GGATC 2 cut(s) 232, 767
BspQI GCTCTTC 3 cut(s) 180, 453, 1289
BspT104I TTCGAA 1 cut(s) 1542
BspT107I GGYRCC 2 cut(s) 932, 1435
BspTI CTTAAG 1 cut(s) 719
BspTNI GGTCTC 2 cut(s) 860, 1218
BsrDI GCAATG 2 cut(s) 1062, 1285
BsrI ACTGG 5 cut(s) 383, 446, 736, 1241, 1511
BssECI CCNNGG 7 cut(s) 16, 196, 252, 1364, 1468, 1484, 1497
BssMI GATC 4 cut(s) 224, 433, 517, 759
BssT1I CCWWGG 4 cut(s) 16, 196, 1484, 1497
Bst2UI CCWGG 4 cut(s) 914, 1365, 1470, 1519
Bst4CI ACNGT 1 cut(s) 1450
Bst6I CTCTTC 6 cut(s) 38, 180, 453, 1289, 1348, 1455
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 2 cut(s) 1390, 1399
BstBI TTCGAA 1 cut(s) 1542
BstC8I GCNNGC 4 cut(s) 465, 469, 1086, 1404
BstDEI CTNAG 5 cut(s) 488, 528, 639, 871, 1106
BstF5I GGATG 3 cut(s) 909, 1114, 1492
BstKTI GATC 4 cut(s) 227, 436, 520, 762
BstMAI GTCTC 3 cut(s) 860, 1094, 1218
BstMBI GATC 4 cut(s) 224, 433, 517, 759
BstMWI GCNNNNNNNGC 4 cut(s) 460, 574, 1390, 1399
BstNI CCWGG 4 cut(s) 914, 1365, 1470, 1519
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 5 cut(s) 252, 912, 1363, 1468, 1517
BstSFI CTRYAG 2 cut(s) 1089, 1382
BstSLI GKGCMC 2 cut(s) 967, 1469
BstV1I GCAGC 3 cut(s) 304, 913, 1418
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 6 cut(s) 80, 122, 497, 905, 1125, 1467
BtsCI GGATG 3 cut(s) 909, 1114, 1492
BtsI GCAGTG 1 cut(s) 1379
BtsIMutI CAGTG 4 cut(s) 453, 1234, 1379, 1424
BveI ACCTGC 2 cut(s) 1089, 1375
Cac8I GCNNGC 4 cut(s) 465, 469, 1086, 1404
CciI TCATGA 2 cut(s) 283, 387
Cfr13I GGNCC 7 cut(s) 90, 200, 371, 1124, 1368, 1465, 1466
Csp6I GTAC 3 cut(s) 933, 1436, 1446
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 5 cut(s) 284, 313, 388, 403, 1456
CviQI GTAC 3 cut(s) 933, 1436, 1446
DdeI CTNAG 5 cut(s) 488, 528, 639, 871, 1106
DpnI GATC 4 cut(s) 226, 435, 519, 761
DpnII GATC 4 cut(s) 224, 433, 517, 759
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 6 cut(s) 38, 180, 453, 1289, 1348, 1455
EarI CTCTTC 6 cut(s) 38, 180, 453, 1289, 1348, 1455
Eco130I CCWWGG 4 cut(s) 16, 196, 1484, 1497
Eco147I AGGCCT 1 cut(s) 905
Eco24I GRGCYC 2 cut(s) 1469, 1492
Eco31I GGTCTC 2 cut(s) 860, 1218
Eco47I GGWCC 4 cut(s) 90, 200, 371, 1368
Eco57I CTGAAG 1 cut(s) 879
EcoO109I RGGNCCY 3 cut(s) 1368, 1465, 1466
EcoRII CCWGG 4 cut(s) 912, 1363, 1468, 1517
EcoT14I CCWWGG 4 cut(s) 16, 196, 1484, 1497
EcoT38I GRGCYC 2 cut(s) 1469, 1492
ErhI CCWWGG 4 cut(s) 16, 196, 1484, 1497
FaeI CATG 5 cut(s) 287, 316, 391, 406, 1459
FalI AAGNNNNNCTT 2 cut(s) 819, 851
FaqI GGGAC 2 cut(s) 215, 1381
FatI CATG 5 cut(s) 283, 312, 387, 402, 1455
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 318, 927, 1407
FokI GGATG 3 cut(s) 896, 1101, 1479
FriOI GRGCYC 2 cut(s) 1469, 1492
Fsp4HI GCNGC 3 cut(s) 318, 927, 1407
FspBI CTAG 3 cut(s) 47, 968, 1304
GluI GCNGC 3 cut(s) 318, 927, 1407
GsuI CTGGAG 1 cut(s) 1271
HaeIII GGCC 6 cut(s) 80, 122, 497, 905, 1125, 1467
HapII CCGG 1 cut(s) 254
Hin1II CATG 5 cut(s) 287, 316, 391, 406, 1459
HincII GTYRAC 4 cut(s) 325, 1146, 1219, 1453
HindII GTYRAC 4 cut(s) 325, 1146, 1219, 1453
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 5 cut(s) 280, 1055, 1142, 1177, 1414
HpaII CCGG 1 cut(s) 254
HphI GGTGA 4 cut(s) 137, 158, 818, 1298
Hpy166II GTNNAC 6 cut(s) 54, 211, 325, 1146, 1219, 1453
Hpy188I TCNGA 7 cut(s) 68, 90, 409, 667, 859, 874, 1060
Hpy188III TCNNGA 7 cut(s) 277, 284, 388, 561, 616, 1033, 1250
Hpy8I GTNNAC 6 cut(s) 54, 211, 325, 1146, 1219, 1453
HpyAV CCTTC 9 cut(s) 113, 152, 304, 452, 790, 916, 1082, 1277, 1426
HpyCH4III ACNGT 1 cut(s) 1450
HpyF10VI GCNNNNNNNGC 4 cut(s) 460, 574, 1390, 1399
HpyF3I CTNAG 5 cut(s) 488, 528, 639, 871, 1106
Hsp92II CATG 5 cut(s) 287, 316, 391, 406, 1459
KpnI GGTACC 2 cut(s) 936, 1439
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 4 cut(s) 224, 433, 517, 759
LguI GCTCTTC 3 cut(s) 180, 453, 1289
LmnI GCTCC 3 cut(s) 444, 524, 769
Lsp1109I GCAGC 3 cut(s) 304, 913, 1418
LweI GCATC 2 cut(s) 474, 741
MaeI CTAG 3 cut(s) 47, 968, 1304
MaeIII GTNAC 2 cut(s) 541, 731
MalI GATC 4 cut(s) 226, 435, 519, 761
MboI GATC 4 cut(s) 224, 433, 517, 759
MfeI CAATTG 1 cut(s) 1161
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 4 cut(s) 774, 967, 1469, 1492
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 7 cut(s) 83, 94, 383, 658, 948, 1131, 1161
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 2 cut(s) 274, 1151
MmeI TCCRAC 3 cut(s) 324, 645, 1142
Mox20I TGGCCA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 269
MscI TGGCCA 1 cut(s) 80
MseI TTAA 4 cut(s) 720, 825, 1130, 1475
MslI CAYNNNNRTG 2 cut(s) 749, 990
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 347
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 5 cut(s) 254, 914, 1365, 1470, 1519
MunI CAATTG 1 cut(s) 1161
Mva1269I GAATGC 1 cut(s) 570
MvaI CCWGG 4 cut(s) 914, 1365, 1470, 1519
MwoI GCNNNNNNNGC 4 cut(s) 460, 574, 1390, 1399
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 337
NdeII GATC 4 cut(s) 224, 433, 517, 759
NlaIII CATG 5 cut(s) 287, 316, 391, 406, 1459
NlaIV GGNNCC 5 cut(s) 373, 934, 1369, 1437, 1467
NmuCI GTSAC 1 cut(s) 731
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 1542
PagI TCATGA 2 cut(s) 283, 387
PceI AGGCCT 1 cut(s) 905
PciSI GCTCTTC 3 cut(s) 180, 453, 1289
PctI GAATGC 1 cut(s) 570
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 3 cut(s) 1055, 1177, 1414
PflMI CCANNNNNTGG 2 cut(s) 134, 1236
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 3 cut(s) 319, 928, 1408
PleI GAGTC 2 cut(s) 274, 1150
PpsI GAGTC 2 cut(s) 274, 1150
PpuMI RGGWCCY 1 cut(s) 1368
PshBI ATTAAT 1 cut(s) 1130
Psp5II RGGWCCY 1 cut(s) 1368
Psp6I CCWGG 4 cut(s) 912, 1363, 1468, 1517
PspGI CCWGG 4 cut(s) 912, 1363, 1468, 1517
PspN4I GGNNCC 5 cut(s) 373, 934, 1369, 1437, 1467
PspOMI GGGCCC 1 cut(s) 1465
PspPI GGNCC 7 cut(s) 90, 200, 371, 1124, 1368, 1465, 1466
PspPPI RGGWCCY 1 cut(s) 1368
PstI CTGCAG 1 cut(s) 1386
PsuI RGATCY 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 3 cut(s) 934, 1437, 1447
RsaNI GTAC 3 cut(s) 933, 1436, 1446
RseI CAYNNNNRTG 2 cut(s) 749, 990
SapI GCTCTTC 3 cut(s) 180, 453, 1289
SaqAI TTAA 4 cut(s) 720, 825, 1130, 1475
SatI GCNGC 3 cut(s) 318, 927, 1407
Sau3AI GATC 4 cut(s) 224, 433, 517, 759
Sau96I GGNCC 7 cut(s) 90, 200, 371, 1124, 1368, 1465, 1466
SchI GAGTC 2 cut(s) 274, 1151
ScrFI CCNGG 5 cut(s) 254, 914, 1365, 1470, 1519
SduI GDGCHC 4 cut(s) 774, 967, 1469, 1492
SfaNI GCATC 2 cut(s) 474, 741
SfcI CTRYAG 2 cut(s) 1089, 1382
SfuI TTCGAA 1 cut(s) 1542
SinI GGWCC 4 cut(s) 90, 200, 371, 1368
SmiMI CAYNNNNRTG 2 cut(s) 749, 990
SmlI CTYRAG 2 cut(s) 275, 719
SmoI CTYRAG 2 cut(s) 275, 719
Sse9I AATT 7 cut(s) 83, 94, 383, 658, 948, 1131, 1161
SseBI AGGCCT 1 cut(s) 905
SsiI CCGC 2 cut(s) 193, 590
SspMI CTAG 3 cut(s) 47, 968, 1304
StuI AGGCCT 1 cut(s) 905
StyD4I CCNGG 5 cut(s) 252, 912, 1363, 1468, 1517
StyI CCWWGG 4 cut(s) 16, 196, 1484, 1497
TaaI ACNGT 1 cut(s) 1450
TaqI TCGA 3 cut(s) 560, 741, 1542
TasI AATT 7 cut(s) 83, 94, 383, 658, 948, 1131, 1161
TfiI GAWTC 3 cut(s) 1055, 1177, 1414
Tru1I TTAA 4 cut(s) 720, 825, 1130, 1475
Tru9I TTAA 4 cut(s) 720, 825, 1130, 1475
TscAI CASTG 4 cut(s) 453, 1241, 1386, 1424
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 3 cut(s) 317, 926, 1406
Tsp45I GTSAC 1 cut(s) 731
TspRI CASTG 4 cut(s) 453, 1241, 1386, 1424
Van91I CCANNNNNTGG 2 cut(s) 134, 1236
Vha464I CTTAAG 1 cut(s) 719
VpaK11BI GGWCC 4 cut(s) 90, 200, 371, 1368
VspI ATTAAT 1 cut(s) 1130
XapI RAATTY 2 cut(s) 83, 383
XceI RCATGY 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 3 cut(s) 47, 968, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.