Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Forward (+)

37340570 .. 37352836

Gene Structure 12267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTGTTCTTATTTTGCCTATTTTAAAACCCACTGTCACTCACTCACTCTCTCGGTCTCTCGGAGTCTCCGTCTCATCGAGACATCGGCACATCGCTACCACACTACGAAGAGCTCATCGAGACTAGGCGAAGCCGCGACGGAGTGTAAGGACAGTCCCGGACTCTCACTCAGCCAGTCTCTCCCGGACAGTCCCGATCTACCCCTGCCACTAGACTTCGTCCGTTCGTCGTCTCCAACTCTCCATCTCCGAGACTCCGACTACACCGTACAGGTTAGAGCTGCTGAGCTTCGGCAAATACTAGTAGAACTTGGACCGGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTACTAATACTAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

124

Amino Acids

13.75

Weight (kDa)

9.12

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	270
AhlI	ACTAGT	1 cut(s)	301
AluBI	AGCT	3 cut(s)	114, 281, 289
AluI	AGCT	3 cut(s)	114, 281, 289
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	9 cut(s)	61, 71, 74, 77, 115, 183, 237, 246, 354
ApeKI	GCWGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	2 cut(s)	159, 185
AvaII	GGWCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	252
BcnI	CCSGG	2 cut(s)	159, 185
BcoDI	GTCTC	9 cut(s)	61, 71, 74, 77, 115, 183, 237, 246, 354
BcuI	ACTAGT	1 cut(s)	301
BfaI	CTAG	3 cut(s)	125, 212, 302
BisI	GCNGC	2 cut(s)	135, 282
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	136, 283
Bme1390I	CCNGG	2 cut(s)	159, 185
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmrFI	CCNGG	2 cut(s)	159, 185
Bpu10I	CCTNAGC	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	159, 185
BsaI	GGTCTC	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	184, 276, 350
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	159, 185, 317
BslFI	GGGAC	2 cut(s)	141, 177
BsmAI	GTCTC	9 cut(s)	61, 71, 74, 77, 115, 183, 237, 246, 354
BsmBI	CGTCTC	3 cut(s)	77, 237, 354
BsmFI	GGGAC	2 cut(s)	141, 177
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	196
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	183, 277, 349
BspFNI	CGCG	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	316
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	4 cut(s)	35, 155, 191, 268
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	4 cut(s)	170, 285, 336, 366
BstFNI	CGCG	1 cut(s)	137
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	9 cut(s)	61, 71, 74, 77, 115, 183, 237, 246, 354
BstMBI	GATC	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	157, 183
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	269
CviJI	RGCY	6 cut(s)	114, 134, 174, 281, 289, 341
CviKI_1	RGCY	6 cut(s)	114, 134, 174, 281, 289, 341
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	4 cut(s)	170, 285, 336, 366
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraI	TTTAAA	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	116
Esp3I	CGTCTC	3 cut(s)	77, 237, 354
FaiI	YATR	1 cut(s)	324
FaqI	GGGAC	2 cut(s)	141, 177
Fnu4HI	GCNGC	2 cut(s)	135, 282
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	135, 282
FspBI	CTAG	3 cut(s)	125, 212, 302
GluI	GCNGC	2 cut(s)	135, 282
HapII	CCGG	3 cut(s)	159, 185, 317
HinfI	GANTC	3 cut(s)	64, 162, 254
HpaII	CCGG	3 cut(s)	159, 185, 317
Hpy188I	TCNGA	3 cut(s)	63, 251, 259
Hpy188III	TCNNGA	4 cut(s)	79, 120, 194, 351
Hpy99I	CGWCG	2 cut(s)	142, 232
HpyCH4III	ACNGT	4 cut(s)	35, 155, 191, 268
HpyF3I	CTNAG	4 cut(s)	170, 285, 336, 366
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	104
LpnPI	CCDG	7 cut(s)	172, 188, 198, 218, 257, 323, 330
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	125, 212, 302
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	73, 156, 248
MmeI	TCCRAC	2 cut(s)	260, 282
MseI	TTAA	1 cut(s)	24
MspI	CCGG	3 cut(s)	159, 185, 317
MspR9I	CCNGG	2 cut(s)	159, 185
MvnI	CGCG	1 cut(s)	137
NciI	CCSGG	2 cut(s)	159, 185
NdeII	GATC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PflFI	GACNNNGTC	1 cut(s)	218
PfoI	TCCNGGA	2 cut(s)	157, 183
PkrI	GCNGC	2 cut(s)	136, 283
PleI	GAGTC	3 cut(s)	72, 156, 248
PpsI	GAGTC	3 cut(s)	72, 156, 248
Psp124BI	GAGCTC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	314
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	135, 282
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	314
SchI	GAGTC	3 cut(s)	73, 156, 248
ScrFI	CCNGG	2 cut(s)	159, 185
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	5 cut(s)	116, 276, 283, 291, 358
SinI	GGWCC	1 cut(s)	314
SpeI	ACTAGT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	3 cut(s)	125, 212, 302
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	157, 183
TaaI	ACNGT	4 cut(s)	35, 155, 191, 268
TaqI	TCGA	3 cut(s)	78, 119, 352
TaqII	GACCGA	1 cut(s)	43
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	35
TspGWI	ACGGA	3 cut(s)	59, 155, 212
TspRI	CASTG	1 cut(s)	38
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	314
XspI	CTAG	3 cut(s)	125, 212, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.