RchiOBHm_Chr1g0374311

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002050
Physical Location & Seq
Reverse (-)
62169042 .. 62172943
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59813

Sequence Viewer

Length: 183 bp
ATGTACTACCCAGCCATCAAACTCTCAGATAGAATTTTAGCTTTTTCGCGGAGCCTCGATCGACATCCATCTTCACTATTTCGTAGGATATTTGTCTTTTATACTGGTGGATTACAGTTGTCAGTATTGTGGACTGGAGTATCTGCCTGTTTTGCTTCCTTGATTGGATCTTGCTGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.74

Weight (kDa)

9.41

Isoelectric Point (pI)

71.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 33
AfaI GTAC 1 cut(s) 5
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AlwI GGATC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 33
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BccI CCATC 2 cut(s) 23, 76
BfaI CTAG 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 63
Bse1I ACTGG 2 cut(s) 109, 139
Bse8I GATNNNNATC 1 cut(s) 63
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 109, 139
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 61
BsiEI CGRYCG 1 cut(s) 61
Bsp143I GATC 2 cut(s) 58, 167
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 175
BsrI ACTGG 2 cut(s) 109, 139
BssMI GATC 2 cut(s) 58, 167
Bst4CI ACNGT 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 25
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 2 cut(s) 61, 170
BstMBI GATC 2 cut(s) 58, 167
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstUI CGCG 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BtsCI GGATG 1 cut(s) 64
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 3 cut(s) 14, 41, 54
CviKI_1 RGCY 3 cut(s) 14, 41, 54
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 25
DpnI GATC 2 cut(s) 60, 169
DpnII GATC 2 cut(s) 58, 167
FaiI YATR 1 cut(s) 102
FokI GGATG 1 cut(s) 51
FspBI CTAG 1 cut(s) 181
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 25
Kzo9I GATC 2 cut(s) 58, 167
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 4 cut(s) 24, 90, 120, 160
MaeI CTAG 1 cut(s) 181
MalI GATC 2 cut(s) 60, 169
MboI GATC 2 cut(s) 58, 167
MboII GAAGA 1 cut(s) 63
MflI RGATCY 1 cut(s) 167
MluCI AATT 1 cut(s) 33
MnlI CCTC 1 cut(s) 65
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 58, 167
NlaIV GGNNCC 1 cut(s) 53
Ple19I CGATCG 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 167
PvuI CGATCG 1 cut(s) 61
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Sau3AI GATC 2 cut(s) 58, 167
SetI ASST 1 cut(s) 43
SgeI CNNG 7 cut(s) 23, 60, 68, 117, 147, 159, 172
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 57, 61
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 3
XapI RAATTY 1 cut(s) 33
XspI CTAG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.