Rmu_sc0009734.1_g000006

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009734.1
OG0002050
Physical Location & Seq
Reverse (-)
22671 .. 30322
7652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009734.1_g000006.1.cds

Sequence Viewer

Length: 855 bp
atggcagcaaaaccggaagaaacagaaataaggagacatttacgtcatcagaatggagaaggccaagcttctggtcctatttctgatatggagaaagatcgacaaattagatcaagaaggtggagacaacgttctatgcaaacgattatttgtattgttcagttgctgcttttcttggtctgtattgagattggtcattgtctagatattagtaacagtgtgcaatcggaatttgaaagtgctttgaacttggatcataaaggatggtggatgtggctgctgctggtgcggggaacgcaatttactatgtttagtataaaattcttaatggcatactattcctcacaggttcatattacttctgaaaacaagaaggccgctcaaggcaagggaattggcagaaaactggttgacaggctctatcaaacatattcttctaaacttgctgataacaagtttgtgtatgataaagagaaagctctatatacagttggtcctctgccgcagaacaagcttgactttacagttcccctggaggagacacttgcaaagagatttcctcttgaattttctcattggttcacgtcatcatggctgcaatatatcctcaaaatcatatcaaagtttgctgccttgctgtcagcttccctatcttggcataatagtttaattgcaacttggttcttcttctcttgtgtggctgtgttgctgtcgaaagccaaggccaaatttaaagaattagttcaattacaacttgataacctcatcacagtttgctccgttgctgccttgttgtcgtggttcccaatcccatctcatcttgctatcttgtccaagatcaagcttcaaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

284

Amino Acids

32.72

Weight (kDa)

9.51

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 3 cut(s) 289, 378, 503
AclI AACGTT 1 cut(s) 130
AclWI GGATC 1 cut(s) 261
AcsI RAATTY 4 cut(s) 230, 320, 566, 728
AfiI CCNNNNNNNGG 1 cut(s) 654
AgsI TTSAA 5 cut(s) 236, 247, 566, 746, 848
AjiI CACGTC 1 cut(s) 585
AjnI CCWGG 1 cut(s) 531
AloI GAACNNNNNNTCC 2 cut(s) 115, 147
AluBI AGCT 5 cut(s) 68, 479, 514, 644, 844
AluI AGCT 5 cut(s) 68, 479, 514, 644, 844
Alw26I GTCTC 3 cut(s) 28, 118, 533
AlwI GGATC 1 cut(s) 261
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 3 cut(s) 61, 375, 723
ApeKI GCWGC 7 cut(s) 5, 166, 277, 280, 595, 629, 785
ApoI RAATTY 4 cut(s) 230, 320, 566, 728
Asp700I GAANNNNTTC 1 cut(s) 741
AspS9I GGNCC 2 cut(s) 74, 494
AvaII GGWCC 2 cut(s) 74, 494
BbvI GCAGC 7 cut(s) 17, 153, 264, 267, 582, 616, 772
BccI CCATC 2 cut(s) 258, 820
BciT130I CCWGG 1 cut(s) 533
BcoDI GTCTC 3 cut(s) 28, 118, 533
BfaI CTAG 1 cut(s) 203
BisI GCNGC 9 cut(s) 6, 167, 278, 281, 378, 503, 596, 630, 786
BlsI GCNGC 9 cut(s) 7, 168, 279, 282, 379, 504, 597, 631, 787
Bme1390I CCNGG 1 cut(s) 533
Bme18I GGWCC 2 cut(s) 74, 494
BmgBI CACGTC 1 cut(s) 585
BmgT120I GGNCC 2 cut(s) 74, 494
BmiI GGNNCC 1 cut(s) 803
BmrFI CCNGG 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 531, 720
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 531, 720
BseGI GGATG 2 cut(s) 269, 276
BseLI CCNNNNNNNGG 1 cut(s) 654
BseNI ACTGG 1 cut(s) 411
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 7 cut(s) 17, 153, 264, 267, 582, 616, 772
BshFI GGCC 3 cut(s) 63, 377, 725
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 654
BsmAI GTCTC 3 cut(s) 28, 118, 533
BsnI GGCC 3 cut(s) 63, 377, 725
Bsp143I GATC 4 cut(s) 97, 110, 253, 837
BspACI CCGC 3 cut(s) 289, 378, 503
BspANI GGCC 3 cut(s) 63, 377, 725
BspLI GGNNCC 1 cut(s) 803
BspPI GGATC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 380
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 531, 720
BssMI GATC 4 cut(s) 97, 110, 253, 837
BssT1I CCWWGG 1 cut(s) 720
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 4 cut(s) 218, 490, 526, 772
BstF5I GGATG 2 cut(s) 269, 276
BstKTI GATC 4 cut(s) 100, 113, 256, 840
BstMAI GTCTC 3 cut(s) 28, 118, 533
BstMBI GATC 4 cut(s) 97, 110, 253, 837
BstMWI GCNNNNNNNGC 3 cut(s) 286, 295, 511
BstNI CCWGG 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 531
BstV1I GCAGC 7 cut(s) 17, 153, 264, 267, 582, 616, 772
BstXI CCANNNNNNTGG 1 cut(s) 71
BsuRI GGCC 3 cut(s) 63, 377, 725
BtrI CACGTC 1 cut(s) 585
BtsCI GGATG 2 cut(s) 269, 276
BtsIMutI CAGTG 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 74, 494
CviAII CATG 1 cut(s) 591
DpnI GATC 4 cut(s) 99, 112, 255, 839
DpnII GATC 4 cut(s) 97, 110, 253, 837
DraI TTTAAA 1 cut(s) 733
DrdI GACNNNNNNGTC 1 cut(s) 42
DseDI GACNNNNNNGTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 720
Eco47I GGWCC 2 cut(s) 74, 494
EcoRII CCWGG 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 1 cut(s) 594
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FatI CATG 1 cut(s) 590
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 9 cut(s) 6, 167, 278, 281, 378, 503, 596, 630, 786
FokI GGATG 2 cut(s) 276, 283
Fsp4HI GCNGC 9 cut(s) 6, 167, 278, 281, 378, 503, 596, 630, 786
FspBI CTAG 1 cut(s) 203
GluI GCNGC 9 cut(s) 6, 167, 278, 281, 378, 503, 596, 630, 786
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 3 cut(s) 63, 377, 725
HapII CCGG 1 cut(s) 14
Hin1II CATG 1 cut(s) 594
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 3 cut(s) 66, 512, 842
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 412, 582
Hpy188I TCNGA 4 cut(s) 51, 85, 229, 364
Hpy188III TCNNGA 3 cut(s) 114, 203, 563
Hpy8I GTNNAC 2 cut(s) 412, 582
HpyAV CCTTC 3 cut(s) 53, 111, 367
HpyCH4III ACNGT 4 cut(s) 218, 490, 526, 772
HpyCH4IV ACGT 3 cut(s) 43, 130, 584
HpyCH4V TGCA 5 cut(s) 139, 223, 548, 598, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 295, 511
HpySE526I ACGT 3 cut(s) 43, 130, 584
Hsp92II CATG 1 cut(s) 594
Kzo9I GATC 4 cut(s) 97, 110, 253, 837
LmnI GCTCC 1 cut(s) 782
LpnPI CCDG 8 cut(s) 27, 57, 269, 332, 392, 400, 518, 545
Lsp1109I GCAGC 7 cut(s) 17, 153, 264, 267, 582, 616, 772
MaeI CTAG 1 cut(s) 203
MaeII ACGT 3 cut(s) 43, 130, 584
MaeIII GTNAC 1 cut(s) 212
MalI GATC 4 cut(s) 99, 112, 255, 839
MbiI CCGCTC 1 cut(s) 380
MboI GATC 4 cut(s) 97, 110, 253, 837
MboII GAAGA 4 cut(s) 29, 426, 676, 679
MnlI CCTC 6 cut(s) 352, 507, 529, 570, 617, 773
MroXI GAANNNNTTC 1 cut(s) 741
MseI TTAA 3 cut(s) 326, 668, 732
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 533
MvaI CCWGG 1 cut(s) 533
MwoI GCNNNNNNNGC 3 cut(s) 286, 295, 511
NdeII GATC 4 cut(s) 97, 110, 253, 837
NlaIII CATG 1 cut(s) 594
NlaIV GGNNCC 1 cut(s) 803
PdmI GAANNNNTTC 1 cut(s) 741
PkrI GCNGC 9 cut(s) 7, 168, 279, 282, 379, 504, 597, 631, 787
Psp1406I AACGTT 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 1 cut(s) 803
PspPI GGNCC 2 cut(s) 74, 494
PsrI GAACNNNNNNTAC 2 cut(s) 286, 318
PstNI CAGNNNCTG 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 3 cut(s) 326, 668, 732
SatI GCNGC 9 cut(s) 6, 167, 278, 281, 378, 503, 596, 630, 786
Sau3AI GATC 4 cut(s) 97, 110, 253, 837
Sau96I GGNCC 2 cut(s) 74, 494
ScrFI CCNGG 1 cut(s) 533
SinI GGWCC 2 cut(s) 74, 494
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
SsiI CCGC 3 cut(s) 289, 378, 503
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 531
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 4 cut(s) 218, 490, 526, 772
TaiI ACGT 3 cut(s) 46, 133, 587
TaqI TCGA 2 cut(s) 100, 713
TauI GCSGC 2 cut(s) 380, 505
Tru1I TTAA 3 cut(s) 326, 668, 732
Tru9I TTAA 3 cut(s) 326, 668, 732
TscAI CASTG 1 cut(s) 223
TseI GCWGC 7 cut(s) 5, 166, 277, 280, 595, 629, 785
TspDTI ATGAA 1 cut(s) 341
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 2 cut(s) 74, 494
XapI RAATTY 4 cut(s) 230, 320, 566, 728
XbaI TCTAGA 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.