Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Forward (+)

19171899 .. 19178952

Gene Structure 7054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGAGGAGGCTGATCAGGGTGTTTGGTGCTGTTGAATTTAGATTTTCTTTGAACAGCAAAGATTTGGGGGTGAATTCGGGTCAGACGGCTGACTCTTCATCATCTTCTCCGATATCTGATCGTAGGGTTGAGTTAATTTGTCACTGCTTCATGGTGCAGCTTGCGTTAGAGTCAGTGCTGGATTTGTTTTGGATTATTCTCTTTTGGTCCGAGGAGTTTTCTCATCACCAAACTACTCAGATAGAGCTGTATGGAATTTTGAATTATCTCGGCCTTTTTTTTCTTATTCAGTTTATAATTAAACTTTTGTGCAGTGTTTTAACTAAGGACGGGTTGGTGTTCATAAGATACTGTTCTGAGACTGGCGCGAGGGAGAGGAAAGCTAATCCGAGAGAGAGAGGAAGAAGAGGAGATTGGGTTGTTGGAATCGAAAGCAGAAGAGAAGAGGTTCGTCTGGATTTCGTAATAGAGGTCTTCTGCGACGGAGAGAGCGACAGAGTGAGGCCGATCCGAGAGAGAGGAAGAGCAGGAGACGGGAAGAGATTCATGGCTGCTAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.79

Weight (kDa)

8.66

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
AccII	CGCG	1 cut(s)	371
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	3 cut(s)	38, 76, 258
AgsI	TTSAA	3 cut(s)	38, 55, 265
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AluBI	AGCT	3 cut(s)	163, 250, 386
AluI	AGCT	3 cut(s)	163, 250, 386
Alw26I	GTCTC	2 cut(s)	356, 528
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	2 cut(s)	274, 506
ApeKI	GCWGC	2 cut(s)	160, 554
ApoI	RAATTY	3 cut(s)	38, 76, 258
Asp700I	GAANNNNTTC	2 cut(s)	450, 545
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	85, 221
AvaII	GGWCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	172, 541
BceAI	ACGGC	1 cut(s)	105
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	356, 528
BisI	GCNGC	2 cut(s)	161, 555
BlsI	GCNGC	2 cut(s)	162, 556
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bse1I	ACTGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	254, 351
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	3 cut(s)	22, 230, 426
BseXI	GCAGC	2 cut(s)	172, 541
BsgI	GTGCAG	2 cut(s)	179, 334
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	276, 508
BsmAI	GTCTC	2 cut(s)	356, 528
BsmBI	CGTCTC	1 cut(s)	528
BsnI	GGCC	2 cut(s)	276, 508
Bsp143I	GATC	3 cut(s)	15, 121, 510
BspANI	GGCC	2 cut(s)	276, 508
BspCNI	CTCAG	2 cut(s)	253, 352
BspFNI	CGCG	1 cut(s)	371
BspPI	GGATC	1 cut(s)	505
BspQI	GCTCTTC	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	15, 121, 510
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	6 cut(s)	103, 403, 436, 441, 520, 536
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	240, 327, 360
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	3 cut(s)	18, 124, 513
BstMAI	GTCTC	2 cut(s)	356, 528
BstMBI	GATC	3 cut(s)	15, 121, 510
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	172, 541
BstV2I	GAAGAC	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	276, 508
BtsI	GCAGTG	2 cut(s)	145, 322
BtsIMutI	CAGTG	3 cut(s)	145, 183, 322
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	210
CviAII	CATG	2 cut(s)	154, 550
CviJI	RGCY	8 cut(s)	13, 92, 163, 250, 276, 386, 508, 554
CviKI_1	RGCY	8 cut(s)	13, 92, 163, 250, 276, 386, 508, 554
DdeI	CTNAG	3 cut(s)	240, 327, 360
DpnI	GATC	3 cut(s)	17, 123, 512
DpnII	GATC	3 cut(s)	15, 121, 510
Eam1104I	CTCTTC	6 cut(s)	103, 403, 436, 441, 520, 536
EarI	CTCTTC	6 cut(s)	103, 403, 436, 441, 520, 536
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	528
FaeI	CATG	2 cut(s)	157, 553
FaiI	YATR	5 cut(s)	155, 255, 299, 347, 551
FatI	CATG	2 cut(s)	153, 549
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	2 cut(s)	161, 555
Fsp4HI	GCNGC	2 cut(s)	161, 555
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	2 cut(s)	161, 555
HaeIII	GGCC	2 cut(s)	276, 508
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	2 cut(s)	157, 553
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	4 cut(s)	95, 173, 429, 546
HphI	GGTGA	2 cut(s)	85, 221
Hpy188I	TCNGA	8 cut(s)	87, 114, 121, 214, 243, 361, 393, 515
Hpy188III	TCNNGA	1 cut(s)	458
Hpy99I	CGWCG	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	160, 315
HpyF3I	CTNAG	3 cut(s)	240, 327, 360
Hsp92II	CATG	2 cut(s)	157, 553
HspAI	GCGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	15, 121, 510
LguI	GCTCTTC	1 cut(s)	520
LpnPI	CCDG	5 cut(s)	4, 167, 351, 443, 516
Lsp1109I	GCAGC	2 cut(s)	172, 541
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	17, 123, 512
MboI	GATC	3 cut(s)	15, 121, 510
MluCI	AATT	7 cut(s)	38, 76, 138, 258, 265, 300, 559
MlyI	GAGTC	2 cut(s)	89, 182
MmeI	TCCRAC	1 cut(s)	406
MroXI	GAANNNNTTC	2 cut(s)	450, 545
MseI	TTAA	3 cut(s)	137, 303, 323
MvnI	CGCG	1 cut(s)	371
NdeII	GATC	3 cut(s)	15, 121, 510
NlaIII	CATG	2 cut(s)	157, 553
NmeAIII	GCCGAG	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PdmI	GAANNNNTTC	2 cut(s)	450, 545
PfeI	GAWTC	2 cut(s)	429, 546
PkrI	GCNGC	2 cut(s)	162, 556
PleI	GAGTC	2 cut(s)	89, 181
PpsI	GAGTC	2 cut(s)	89, 181
PsiI	TTATAA	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	520
SaqAI	TTAA	3 cut(s)	137, 303, 323
SatI	GCNGC	2 cut(s)	161, 555
Sau3AI	GATC	3 cut(s)	15, 121, 510
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	89, 182
SetI	ASST	5 cut(s)	165, 252, 388, 453, 477
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	7 cut(s)	38, 76, 138, 258, 265, 300, 559
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	432
TasI	AATT	7 cut(s)	38, 76, 138, 258, 265, 300, 559
TfiI	GAWTC	2 cut(s)	429, 546
Tru1I	TTAA	3 cut(s)	137, 303, 323
Tru9I	TTAA	3 cut(s)	137, 303, 323
TscAI	CASTG	3 cut(s)	152, 183, 322
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	160, 554
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	17, 90, 142, 334, 538
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	3 cut(s)	152, 183, 322
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	3 cut(s)	38, 76, 258
XmnI	GAANNNNTTC	2 cut(s)	450, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.