Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Reverse (-)

28191022 .. 28193590

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTGTTTTCTAAAGGTGGCGAATCCGAGCAGAGACAGAGACGACGAGCGCGCCGCCGCGGCGGGGCAAGGAAATGAGACTGAGCAAACTCATGAACAGAGAGACCTTATCGAAGAGTGGCTGCTATTTGAGCCCCTGCTTTTTTCTCAGCAACAACGACGTGGTGGTGGTGGTGGTAGTGGTGTTGGTGGAATATTAGCTTCGTCGTCAATGCTGTTGCGATTGGATAGGGAGAGGGAGATGTCGGCAATGGTTTCGGCTCTGACGCAAGTGTTGACAGGAGAGGAGCAGACTAGGTTTGATGTGGTTAACGATTCGGATTCGCCGGCGGGGAATGGTTTGTGCGGTGGCGTTGGGAGTAAGAGAGGAAGAGAAGAGGAAGGAGGTGGTGGTGGACAGAATATGTCTGAGTCGGTTTCAAGTCTTTGCAGAACATTTGGTGATTTTCCACAACAGGGCTCACCTTCATCCTCCTCTGTTTTTCCAGAAAACTCGATCACAAGAACTCGAAGGACTACTAGCACTACCCCACCTATACAAACAGCATATGAATATAGTGCACCTCAATTATCAGAACAACCAATAAGGAGAAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCTGAGATCAGAGACCCGTTCAAGGCTGCCAGAGTCTGGCTAGGCACATTCGACACAGCAGAAGCCGCAGCACAAGCCTACGACACGGCCGCCCTGCGCTTCCGAGGTAACAAGGCCAAACTCAACTTCCCGGAAAACGTCAGACTCCGATCGCTACCATCATCAGCTGCAGAAAATCCAATGACGACCCAACCTACAGTTTCGGGTTCTTCGAATGCCCTCCTGTCTATTCCTACATCCACCGAACCTATTGTTCACTCCCAAGCATCTGCTTCATTCCAACAACAACGGCCTATGAGTCTTTATGATCAGATGGTTTTGTTATCTTCGTCTTCATCTCCATCAGCTACTTCTTCTTCTACACTCGCCTCCTCTGTTTCCTCTGCTTCTTCTTCGCCGCCACCGCCTGCCTTTTCGTCACTTTTTAGTGCTCAGGCAACGTCACCGGTTCAGCTCAGACAAGCTACCGGTGATCAGAGTGGCGGAGCTGATTTTTCAGTGCAGCAGCAATGGTCAACGAGCTCCGGTCATTACAGTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

392

Amino Acids

41.94

Weight (kDa)

6.05

Isoelectric Point (pI)

66.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	198 - 247	1.2e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	669
AccII	CGCG	2 cut(s)	51, 59
AcoI	YGGCCR	1 cut(s)	720
AfaI	GTAC	1 cut(s)	1171
AfiI	CCNNNNNNNGG	4 cut(s)	63, 455, 655, 669
AgeI	ACCGGT	2 cut(s)	1078, 1100
AgsI	TTSAA	2 cut(s)	420, 655
AjiI	CACGTC	1 cut(s)	161
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	8 cut(s)	200, 635, 800, 980, 1087, 1097, 1121, 1155
AluI	AGCT	8 cut(s)	200, 635, 800, 980, 1087, 1097, 1121, 1155
Alw21I	GWGCWC	3 cut(s)	562, 1066, 1157
Alw26I	GTCTC	5 cut(s)	27, 33, 71, 96, 639
Alw44I	GTGCAC	1 cut(s)	558
AlwNI	CAGNNNCTG	1 cut(s)	669
AoxI	GGCC	4 cut(s)	614, 720, 747, 923
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	7 cut(s)	121, 632, 659, 701, 800, 1135, 1138
AsiGI	ACCGGT	2 cut(s)	1078, 1100
AspLEI	GCGC	3 cut(s)	51, 53, 732
AsuC2I	CCSGG	1 cut(s)	764
AsuHPI	GGTGA	4 cut(s)	452, 453, 1068, 1115
AsuII	TTCGAA	1 cut(s)	845
BaeGI	GKGCMC	1 cut(s)	562
BanII	GRGCYC	3 cut(s)	135, 461, 1157
BbsI	GAAGAC	1 cut(s)	957
Bbv12I	GWGCWC	3 cut(s)	562, 1066, 1157
BbvI	GCAGC	7 cut(s)	108, 644, 646, 713, 787, 1147, 1150
BccI	CCATC	3 cut(s)	799, 940, 982
BceAI	ACGGC	2 cut(s)	735, 938
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BclI	TGATCA	2 cut(s)	940, 1105
BcnI	CCSGG	1 cut(s)	764
BcoDI	GTCTC	5 cut(s)	27, 33, 71, 96, 639
BfaI	CTAG	4 cut(s)	294, 519, 674, 1177
BfmI	CTRYAG	2 cut(s)	801, 828
BglI	GCCNNNNNGGC	1 cut(s)	59
BmcAI	AGTACT	1 cut(s)	1171
Bme1390I	CCNGG	1 cut(s)	764
BmgBI	CACGTC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	908
BpiI	GAAGAC	1 cut(s)	957
Bpu10I	CCTNAGC	1 cut(s)	1065
Bpu14I	TTCGAA	1 cut(s)	845
BpuMI	CCSGG	1 cut(s)	764
BsaI	GGTCTC	2 cut(s)	96, 639
BsaJI	CCNNGG	3 cut(s)	57, 617, 736
BsaWI	WCCGGW	3 cut(s)	1078, 1100, 1157
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 455, 655, 669
Bse118I	RCCGGY	3 cut(s)	325, 1078, 1100
Bse3DI	GCAATG	2 cut(s)	255, 1148
BseDI	CCNNGG	3 cut(s)	57, 617, 736
BseGI	GGATG	2 cut(s)	467, 869
BseLI	CCNNNNNNNGG	4 cut(s)	63, 455, 655, 669
BseMI	GCAATG	2 cut(s)	255, 1148
BseMII	CTCAG	6 cut(s)	72, 161, 399, 627, 1079, 1102
BsePI	GCGCGC	1 cut(s)	49
BseRI	GAGGAG	4 cut(s)	299, 463, 615, 994
BseSI	GKGCMC	1 cut(s)	562
BseX3I	CGGCCG	1 cut(s)	720
BseXI	GCAGC	7 cut(s)	108, 644, 646, 713, 787, 1147, 1150
BsgI	GTGCAG	1 cut(s)	1154
Bsh1236I	CGCG	2 cut(s)	51, 59
Bsh1285I	CGRYCG	2 cut(s)	723, 785
BshFI	GGCC	4 cut(s)	616, 722, 749, 925
BshTI	ACCGGT	2 cut(s)	1078, 1100
BsiEI	CGRYCG	2 cut(s)	723, 785
BsiHKAI	GWGCWC	3 cut(s)	562, 1066, 1157
BsiSI	CCGG	5 cut(s)	326, 764, 1079, 1101, 1158
BslI	CCNNNNNNNGG	4 cut(s)	63, 455, 655, 669
BsmAI	GTCTC	5 cut(s)	27, 33, 71, 96, 639
BsmBI	CGTCTC	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	4 cut(s)	616, 722, 749, 925
Bso31I	GGTCTC	2 cut(s)	96, 639
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	5 cut(s)	135, 461, 562, 1066, 1157
Bsp143I	GATC	5 cut(s)	495, 639, 782, 940, 1105
Bsp19I	CCATGG	1 cut(s)	617
BspANI	GGCC	4 cut(s)	616, 722, 749, 925
BspCNI	CTCAG	6 cut(s)	73, 160, 400, 628, 1078, 1101
BspFNI	CGCG	2 cut(s)	51, 59
BspHI	TCATGA	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	805
BspT104I	TTCGAA	1 cut(s)	845
BspTNI	GGTCTC	2 cut(s)	96, 639
BsrDI	GCAATG	2 cut(s)	255, 1148
BsrFI	RCCGGY	3 cut(s)	325, 1078, 1100
BssAI	RCCGGY	3 cut(s)	325, 1078, 1100
BssECI	CCNNGG	3 cut(s)	57, 617, 736
BssHII	GCGCGC	1 cut(s)	49
BssMI	GATC	5 cut(s)	495, 639, 782, 940, 1105
BssT1I	CCWWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	832, 1169
Bst6I	CTCTTC	3 cut(s)	108, 364, 369
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	3 cut(s)	51, 327, 1041
BstDEI	CTNAG	6 cut(s)	81, 147, 408, 636, 1065, 1088
BstDSI	CCRYGG	2 cut(s)	57, 617
BstF5I	GGATG	2 cut(s)	467, 869
BstFNI	CGCG	2 cut(s)	51, 59
BstHHI	GCGC	3 cut(s)	51, 53, 732
BstKTI	GATC	5 cut(s)	498, 642, 785, 943, 1108
BstMAI	GTCTC	5 cut(s)	27, 33, 71, 96, 639
BstMBI	GATC	5 cut(s)	495, 639, 782, 940, 1105
BstMCI	CGRYCG	2 cut(s)	723, 785
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 130, 698, 707, 1036
BstSCI	CCNGG	1 cut(s)	762
BstSFI	CTRYAG	2 cut(s)	801, 828
BstSLI	GKGCMC	1 cut(s)	562
BstUI	CGCG	2 cut(s)	51, 59
BstV1I	GCAGC	7 cut(s)	108, 644, 646, 713, 787, 1147, 1150
BstV2I	GAAGAC	1 cut(s)	957
BstZI	CGGCCG	1 cut(s)	720
BsuRI	GGCC	4 cut(s)	616, 722, 749, 925
BtgI	CCRYGG	2 cut(s)	57, 617
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	467, 869
BtsIMutI	CAGTG	1 cut(s)	1137
Cac8I	GCNNGC	3 cut(s)	51, 327, 1041
CaiI	CAGNNNCTG	1 cut(s)	669
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	3 cut(s)	51, 53, 732
Cfr10I	RCCGGY	3 cut(s)	325, 1078, 1100
Cfr42I	CCGCGG	1 cut(s)	60
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	1170
CspAI	ACCGGT	2 cut(s)	1078, 1100
CviAII	CATG	2 cut(s)	92, 618
CviQI	GTAC	1 cut(s)	1170
DdeI	CTNAG	6 cut(s)	81, 147, 408, 636, 1065, 1088
DpnI	GATC	5 cut(s)	497, 641, 784, 942, 1107
DpnII	GATC	5 cut(s)	495, 639, 782, 940, 1105
EaeI	YGGCCR	1 cut(s)	720
EagI	CGGCCG	1 cut(s)	720
Eam1104I	CTCTTC	3 cut(s)	108, 364, 369
EarI	CTCTTC	3 cut(s)	108, 364, 369
EciI	GGCGGA	1 cut(s)	1131
Ecl136II	GAGCTC	1 cut(s)	1155
EclXI	CGGCCG	1 cut(s)	720
Eco130I	CCWWGG	1 cut(s)	617
Eco24I	GRGCYC	3 cut(s)	135, 461, 1157
Eco31I	GGTCTC	2 cut(s)	96, 639
Eco52I	CGGCCG	1 cut(s)	720
Eco53kI	GAGCTC	1 cut(s)	1155
EcoICRI	GAGCTC	1 cut(s)	1155
EcoT14I	CCWWGG	1 cut(s)	617
EcoT38I	GRGCYC	3 cut(s)	135, 461, 1157
ErhI	CCWWGG	1 cut(s)	617
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	95, 621
FaiI	YATR	9 cut(s)	93, 404, 536, 547, 549, 555, 619, 929, 939
FatI	CATG	2 cut(s)	91, 617
FauI	CCCGC	2 cut(s)	55, 322
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	2 cut(s)	940, 1105
FokI	GGATG	2 cut(s)	454, 856
FriOI	GRGCYC	3 cut(s)	135, 461, 1157
FspBI	CTAG	4 cut(s)	294, 519, 674, 1177
GlaI	GCGC	3 cut(s)	50, 52, 731
HaeIII	GGCC	4 cut(s)	616, 722, 749, 925
HapII	CCGG	5 cut(s)	326, 764, 1079, 1101, 1158
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	3 cut(s)	51, 53, 732
Hin1II	CATG	2 cut(s)	95, 621
Hin6I	GCGC	3 cut(s)	49, 51, 730
HinP1I	GCGC	3 cut(s)	49, 51, 730
HincII	GTYRAC	3 cut(s)	276, 310, 1149
HindII	GTYRAC	3 cut(s)	276, 310, 1149
HinfI	GANTC	7 cut(s)	22, 314, 320, 410, 666, 777, 931
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	5 cut(s)	326, 764, 1079, 1101, 1158
HphI	GGTGA	4 cut(s)	452, 453, 1068, 1115
Hpy166II	GTNNAC	6 cut(s)	276, 310, 395, 560, 889, 1149
Hpy188III	TCNNGA	2 cut(s)	92, 485
Hpy8I	GTNNAC	6 cut(s)	276, 310, 395, 560, 889, 1149
Hpy99I	CGWCG	3 cut(s)	47, 162, 208
HpyAV	CCTTC	3 cut(s)	374, 474, 504
HpyCH4III	ACNGT	2 cut(s)	832, 1169
HpyCH4IV	ACGT	3 cut(s)	160, 771, 1073
HpyCH4V	TGCA	4 cut(s)	429, 560, 803, 1135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 130, 698, 707, 1036
HpyF3I	CTNAG	6 cut(s)	81, 147, 408, 636, 1065, 1088
HpySE526I	ACGT	3 cut(s)	160, 771, 1073
Hsp92II	CATG	2 cut(s)	95, 621
HspAI	GCGC	3 cut(s)	49, 51, 730
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
Ksp22I	TGATCA	2 cut(s)	940, 1105
KspAI	GTTAAC	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	495, 639, 782, 940, 1105
LmnI	GCTCC	3 cut(s)	286, 1118, 1160
Lsp1109I	GCAGC	7 cut(s)	108, 644, 646, 713, 787, 1147, 1150
LweI	GCATC	1 cut(s)	908
MaeI	CTAG	4 cut(s)	294, 519, 674, 1177
MaeII	ACGT	3 cut(s)	160, 771, 1073
MaeIII	GTNAC	3 cut(s)	740, 1050, 1074
MalI	GATC	5 cut(s)	497, 641, 784, 942, 1107
MboI	GATC	5 cut(s)	495, 639, 782, 940, 1105
MhlI	GDGCHC	5 cut(s)	135, 461, 562, 1066, 1157
MluCI	AATT	1 cut(s)	566
MlyI	GAGTC	4 cut(s)	419, 675, 771, 940
MmeI	TCCRAC	1 cut(s)	937
MreI	CGCCGGCG	1 cut(s)	325
MroNI	GCCGGC	1 cut(s)	325
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	3 cut(s)	59, 635, 800
MspI	CCGG	5 cut(s)	326, 764, 1079, 1101, 1158
MspR9I	CCNGG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	853
MvnI	CGCG	2 cut(s)	51, 59
MwoI	GCNNNNNNNGC	5 cut(s)	59, 130, 698, 707, 1036
NaeI	GCCGGC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	764
NcoI	CCATGG	1 cut(s)	617
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	5 cut(s)	495, 639, 782, 940, 1105
NgoMIV	GCCGGC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	95, 621
NmuCI	GTSAC	2 cut(s)	1050, 1074
NspV	TTCGAA	1 cut(s)	845
PagI	TCATGA	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	842
PctI	GAATGC	1 cut(s)	853
PdiI	GCCGGC	1 cut(s)	327
PfeI	GAWTC	3 cut(s)	22, 314, 320
PflMI	CCANNNNNTGG	1 cut(s)	669
PfoI	TCCNGGA	1 cut(s)	762
PinAI	ACCGGT	2 cut(s)	1078, 1100
Ple19I	CGATCG	1 cut(s)	785
PleI	GAGTC	4 cut(s)	418, 674, 771, 939
PpsI	GAGTC	4 cut(s)	418, 674, 771, 939
Psp124BI	GAGCTC	1 cut(s)	1157
PstI	CTGCAG	1 cut(s)	805
PstNI	CAGNNNCTG	1 cut(s)	669
PteI	GCGCGC	1 cut(s)	49
PvuI	CGATCG	1 cut(s)	785
PvuII	CAGCTG	2 cut(s)	635, 800
RsaI	GTAC	1 cut(s)	1171
RsaNI	GTAC	1 cut(s)	1170
SacI	GAGCTC	1 cut(s)	1157
SacII	CCGCGG	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	5 cut(s)	495, 639, 782, 940, 1105
ScaI	AGTACT	1 cut(s)	1171
SchI	GAGTC	4 cut(s)	419, 675, 771, 940
ScrFI	CCNGG	1 cut(s)	764
SduI	GDGCHC	5 cut(s)	135, 461, 562, 1066, 1157
SfaNI	GCATC	1 cut(s)	908
SfcI	CTRYAG	2 cut(s)	801, 828
Sfr303I	CCGCGG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	845
SgrAI	CRCCGGYG	1 cut(s)	325
SgrBI	CCGCGG	1 cut(s)	60
Sse9I	AATT	1 cut(s)	566
SspI	AATATT	1 cut(s)	195
SspMI	CTAG	4 cut(s)	294, 519, 674, 1177
SstI	GAGCTC	1 cut(s)	1157
StyD4I	CCNGG	1 cut(s)	762
StyI	CCWWGG	1 cut(s)	617
TaaI	ACNGT	2 cut(s)	832, 1169
TaiI	ACGT	3 cut(s)	163, 774, 1076
TaqI	TCGA	5 cut(s)	111, 494, 508, 684, 845
TasI	AATT	1 cut(s)	566
TatI	WGTACW	1 cut(s)	1169
TauI	GCSGC	6 cut(s)	56, 59, 62, 701, 725, 1033
TfiI	GAWTC	3 cut(s)	22, 314, 320
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	1137
TseFI	GTSAC	2 cut(s)	1050, 1074
TseI	GCWGC	7 cut(s)	121, 632, 659, 701, 800, 1135, 1138
Tsp45I	GTSAC	2 cut(s)	1050, 1074
TspDTI	ATGAA	5 cut(s)	108, 456, 564, 897, 957
TspRI	CASTG	1 cut(s)	1137
Van91I	CCANNNNNTGG	1 cut(s)	669
VneI	GTGCAC	1 cut(s)	558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	624
XspI	CTAG	4 cut(s)	294, 519, 674, 1177
ZrmI	AGTACT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.