Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002889.1

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Forward (+)

116937 .. 121451

Gene Structure 4515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002889.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggcagcaaaaccggaagaaacagaaataaggagacatttacgtcatcagaatggagaaggccaagcttctggtcctatttctgatatggagaaagatcgacaaattagatcaagaaggtggagacaacgttctatgcaaacgattatttgtattgttcagttgctgcttttcttggtctgtattgagattggtcattgtctagatattagtaacagtgtgcaatcggaatttgaaagtgctttgaacttggatcataaaggatggtggatgtggctgctgctggtgcggggaacgcaatttactatgtttagtataaaattcttaatggcatactattcctcacaggttcatattacttctgaaaacaagaaggccgctcaaggcaagggaattggcagagaactggttgatgggctctatcaaacatattcctctaaacttgctgataacaagtttgtgtatgataaagagaaagctctatatacagttggtcctctgccgcagaacaagcttgactttacagttcccctggaggagacatttgcaaagagttttcttgctctgaaaaccttatcattcatgcacagtagcggtgttcctatagatacgtatgctttgtgtaattctttaactgctccatcttctattaaagatgttggtttcggtagaaagatacatgcccatgtggtaaagtcaggctggtgctccagtgtttttgttgggagtgctctgattggcttgaatgccaagtcattggttataggagatgcagaccaagtgtttgatgaaatgccgctgagaaacactgtttgtgcaaacgcacttttatcaggttatggtgatgccaagttgtggacagaggcagtagaattgatcaggaagatgccggcactgagtttggagtatgatcacttcacattgtccgcggcattacgtgcctgtgctgggctagctgcagttgaattgggtaggcaggtacatggttatttgatgcgttcggtttatgatgtgggaagtgatgtttctgctgagttcattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

348

Amino Acids

38.77

Weight (kDa)

7.13

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	967
AccB7I	CCANNNNNTGG	1 cut(s)	855
AccBSI	CCGCTC	1 cut(s)	380
AccII	CGCG	1 cut(s)	929
AciI	CCGC	7 cut(s)	289, 378, 503, 594, 797, 927, 929
AclI	AACGTT	1 cut(s)	130
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	230, 320
AfaI	GTAC	1 cut(s)	981
AfiI	CCNNNNNNNGG	2 cut(s)	855, 948
AgsI	TTSAA	4 cut(s)	236, 247, 745, 965
AjnI	CCWGG	1 cut(s)	531
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
AluBI	AGCT	4 cut(s)	68, 479, 514, 956
AluI	AGCT	4 cut(s)	68, 479, 514, 956
Alw21I	GWGCWC	2 cut(s)	710, 733
Alw26I	GTCTC	3 cut(s)	28, 118, 533
AlwI	GGATC	1 cut(s)	261
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	61, 375
ApeKI	GCWGC	5 cut(s)	5, 166, 277, 280, 956
ApoI	RAATTY	2 cut(s)	230, 320
ArsI	GACNNNNNNTTYG	2 cut(s)	767, 799
AspS9I	GGNCC	2 cut(s)	74, 494
AsuHPI	GGTGA	1 cut(s)	854
AsuNHI	GCTAGC	1 cut(s)	952
AvaII	GGWCC	2 cut(s)	74, 494
BanII	GRGCYC	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	899, 931
Bbv12I	GWGCWC	2 cut(s)	710, 733
BbvI	GCAGC	5 cut(s)	17, 153, 264, 267, 943
BccI	CCATC	3 cut(s)	258, 407, 649
BciT130I	CCWGG	1 cut(s)	533
BclI	TGATCA	2 cut(s)	876, 910
BcoDI	GTCTC	3 cut(s)	28, 118, 533
BfaI	CTAG	2 cut(s)	203, 953
BfmI	CTRYAG	2 cut(s)	603, 957
BfuAI	ACCTGC	1 cut(s)	967
BisI	GCNGC	9 cut(s)	6, 167, 278, 281, 378, 503, 797, 930, 957
BlsI	GCNGC	9 cut(s)	7, 168, 279, 282, 379, 504, 798, 931, 958
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	2 cut(s)	74, 494
BmgT120I	GGNCC	2 cut(s)	74, 494
BmrFI	CCNGG	1 cut(s)	533
BmsI	GCATC	4 cut(s)	760, 835, 876, 984
BmtI	GCTAGC	1 cut(s)	956
BpmI	CTGGAG	2 cut(s)	554, 694
BpuEI	CTTGAG	1 cut(s)	366
BsaAI	YACGTR	2 cut(s)	612, 938
BsaJI	CCNNGG	2 cut(s)	531, 927
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	855, 948
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	411, 711
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	531, 927
BseGI	GGATG	2 cut(s)	269, 276
BseLI	CCNNNNNNNGG	2 cut(s)	855, 948
BseMII	CTCAG	3 cut(s)	791, 887, 1023
BseNI	ACTGG	2 cut(s)	411, 711
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	5 cut(s)	17, 153, 264, 267, 943
BseYI	CCCAGC	1 cut(s)	947
Bsh1236I	CGCG	1 cut(s)	929
BshFI	GGCC	2 cut(s)	63, 377
BsiHKAI	GWGCWC	2 cut(s)	710, 733
BsiSI	CCGG	2 cut(s)	14, 890
BslI	CCNNNNNNNGG	2 cut(s)	855, 948
BsmAI	GTCTC	3 cut(s)	28, 118, 533
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	2 cut(s)	63, 377
Bsp1286I	GDGCHC	3 cut(s)	420, 710, 733
Bsp143I	GATC	5 cut(s)	97, 110, 253, 876, 910
BspACI	CCGC	7 cut(s)	289, 378, 503, 594, 797, 927, 929
BspANI	GGCC	2 cut(s)	63, 377
BspCNI	CTCAG	3 cut(s)	792, 888, 1024
BspFNI	CGCG	1 cut(s)	929
BspMAI	CTGCAG	1 cut(s)	961
BspMI	ACCTGC	1 cut(s)	967
BspOI	GCTAGC	1 cut(s)	956
BspPI	GGATC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	411, 711
BssAI	RCCGGY	1 cut(s)	889
BssECI	CCNNGG	2 cut(s)	531, 927
BssMI	GATC	5 cut(s)	97, 110, 253, 876, 910
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	5 cut(s)	218, 490, 526, 590, 811
BstAPI	GCANNNNNTGC	1 cut(s)	938
BstBAI	YACGTR	2 cut(s)	612, 938
BstC8I	GCNNGC	2 cut(s)	891, 954
BstDEI	CTNAG	3 cut(s)	800, 896, 1032
BstDSI	CCRYGG	1 cut(s)	927
BstF5I	GGATG	2 cut(s)	269, 276
BstFNI	CGCG	1 cut(s)	929
BstKTI	GATC	5 cut(s)	100, 113, 256, 879, 913
BstMAI	GTCTC	3 cut(s)	28, 118, 533
BstMBI	GATC	5 cut(s)	97, 110, 253, 876, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	286, 295, 511, 938, 953
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	1 cut(s)	683
BstSCI	CCNGG	1 cut(s)	531
BstSFI	CTRYAG	2 cut(s)	603, 957
BstSNI	TACGTA	1 cut(s)	612
BstUI	CGCG	1 cut(s)	929
BstV1I	GCAGC	5 cut(s)	17, 153, 264, 267, 943
BstXI	CCANNNNNNTGG	2 cut(s)	71, 757
BsuRI	GGCC	2 cut(s)	63, 377
BtgI	CCRYGG	1 cut(s)	927
BtsCI	GGATG	2 cut(s)	269, 276
BtsIMutI	CAGTG	4 cut(s)	223, 718, 807, 893
BveI	ACCTGC	1 cut(s)	967
Cac8I	GCNNGC	2 cut(s)	891, 954
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	2 cut(s)	74, 494
Cfr42I	CCGCGG	1 cut(s)	930
Csp6I	GTAC	1 cut(s)	980
CviAII	CATG	4 cut(s)	583, 680, 686, 983
CviQI	GTAC	1 cut(s)	980
DdeI	CTNAG	3 cut(s)	800, 896, 1032
DpnI	GATC	5 cut(s)	99, 112, 255, 878, 912
DpnII	GATC	5 cut(s)	97, 110, 253, 876, 910
DrdI	GACNNNNNNGTC	1 cut(s)	42
DseDI	GACNNNNNNGTC	1 cut(s)	42
Eco105I	TACGTA	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	74, 494
EcoRII	CCWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	420
FaeI	CATG	4 cut(s)	586, 683, 689, 986
FalI	AAGNNNNNCTT	2 cut(s)	503, 535
FatI	CATG	4 cut(s)	582, 679, 685, 982
FauI	CCCGC	1 cut(s)	282
FbaI	TGATCA	2 cut(s)	876, 910
Fnu4HI	GCNGC	9 cut(s)	6, 167, 278, 281, 378, 503, 797, 930, 957
FokI	GGATG	2 cut(s)	276, 283
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	9 cut(s)	6, 167, 278, 281, 378, 503, 797, 930, 957
FspBI	CTAG	2 cut(s)	203, 953
GluI	GCNGC	9 cut(s)	6, 167, 278, 281, 378, 503, 797, 930, 957
GsaI	CCCAGC	1 cut(s)	951
GsuI	CTGGAG	2 cut(s)	554, 694
HaeIII	GGCC	2 cut(s)	63, 377
HapII	CCGG	2 cut(s)	14, 890
Hin1II	CATG	4 cut(s)	586, 683, 689, 986
HindIII	AAGCTT	2 cut(s)	66, 512
HpaII	CCGG	2 cut(s)	14, 890
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	1 cut(s)	858
Hpy188I	TCNGA	6 cut(s)	51, 85, 229, 364, 567, 735
Hpy188III	TCNNGA	3 cut(s)	114, 203, 880
Hpy8I	GTNNAC	1 cut(s)	858
HpyAV	CCTTC	3 cut(s)	53, 111, 367
HpyCH4III	ACNGT	5 cut(s)	218, 490, 526, 590, 811
HpyCH4IV	ACGT	4 cut(s)	43, 130, 611, 937
HpyCH4V	TGCA	7 cut(s)	139, 223, 548, 586, 773, 818, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	286, 295, 511, 938, 953
HpyF3I	CTNAG	3 cut(s)	800, 896, 1032
HpySE526I	ACGT	4 cut(s)	43, 130, 611, 937
Hsp92II	CATG	4 cut(s)	586, 683, 689, 986
KroI	GCCGGC	1 cut(s)	889
KroNI	GCCGGC	1 cut(s)	891
Ksp22I	TGATCA	2 cut(s)	876, 910
KspI	CCGCGG	1 cut(s)	930
Kzo9I	GATC	5 cut(s)	97, 110, 253, 876, 910
LmnI	GCTCC	2 cut(s)	643, 713
Lsp1109I	GCAGC	5 cut(s)	17, 153, 264, 267, 943
LweI	GCATC	4 cut(s)	760, 835, 876, 984
MaeI	CTAG	2 cut(s)	203, 953
MaeII	ACGT	4 cut(s)	43, 130, 611, 937
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	5 cut(s)	99, 112, 255, 878, 912
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	5 cut(s)	97, 110, 253, 876, 910
MboII	GAAGA	3 cut(s)	29, 636, 895
MhlI	GDGCHC	3 cut(s)	420, 710, 733
MluCI	AATT	8 cut(s)	105, 230, 299, 320, 393, 625, 872, 965
MnlI	CCTC	5 cut(s)	352, 445, 507, 529, 856
MroNI	GCCGGC	1 cut(s)	889
MseI	TTAA	3 cut(s)	326, 632, 651
MslI	CAYNNNNRTG	2 cut(s)	51, 684
MspA1I	CMGCKG	2 cut(s)	799, 929
MspI	CCGG	2 cut(s)	14, 890
MspR9I	CCNGG	1 cut(s)	533
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	929
MwoI	GCNNNNNNNGC	5 cut(s)	286, 295, 511, 938, 953
NaeI	GCCGGC	1 cut(s)	891
NdeII	GATC	5 cut(s)	97, 110, 253, 876, 910
NgoMIV	GCCGGC	1 cut(s)	889
NheI	GCTAGC	1 cut(s)	952
NlaIII	CATG	4 cut(s)	586, 683, 689, 986
NspI	RCATGY	1 cut(s)	683
PctI	GAATGC	1 cut(s)	751
PdiI	GCCGGC	1 cut(s)	891
PflMI	CCANNNNNTGG	1 cut(s)	855
PkrI	GCNGC	9 cut(s)	7, 168, 279, 282, 379, 504, 798, 931, 958
Ppu21I	YACGTR	2 cut(s)	612, 938
Psp1406I	AACGTT	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	1 cut(s)	531
PspPI	GGNCC	2 cut(s)	74, 494
PsrI	GAACNNNNNNTAC	2 cut(s)	286, 318
PstI	CTGCAG	1 cut(s)	961
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	981
RsaNI	GTAC	1 cut(s)	980
RseI	CAYNNNNRTG	2 cut(s)	51, 684
SacII	CCGCGG	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	326, 632, 651
SatI	GCNGC	9 cut(s)	6, 167, 278, 281, 378, 503, 797, 930, 957
Sau3AI	GATC	5 cut(s)	97, 110, 253, 876, 910
Sau96I	GGNCC	2 cut(s)	74, 494
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	3 cut(s)	420, 710, 733
SfaNI	GCATC	4 cut(s)	760, 835, 876, 984
SfcI	CTRYAG	2 cut(s)	603, 957
Sfr303I	CCGCGG	1 cut(s)	930
SgrBI	CCGCGG	1 cut(s)	930
SinI	GGWCC	2 cut(s)	74, 494
SmiMI	CAYNNNNRTG	2 cut(s)	51, 684
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SnaBI	TACGTA	1 cut(s)	612
Sse9I	AATT	8 cut(s)	105, 230, 299, 320, 393, 625, 872, 965
SsiI	CCGC	7 cut(s)	289, 378, 503, 594, 797, 927, 929
SspMI	CTAG	2 cut(s)	203, 953
StyD4I	CCNGG	1 cut(s)	531
TaaI	ACNGT	5 cut(s)	218, 490, 526, 590, 811
TaiI	ACGT	4 cut(s)	46, 133, 614, 940
TaqI	TCGA	1 cut(s)	100
TasI	AATT	8 cut(s)	105, 230, 299, 320, 393, 625, 872, 965
TauI	GCSGC	4 cut(s)	380, 505, 799, 932
Tru1I	TTAA	3 cut(s)	326, 632, 651
Tru9I	TTAA	3 cut(s)	326, 632, 651
TscAI	CASTG	4 cut(s)	223, 718, 814, 900
TseI	GCWGC	5 cut(s)	5, 166, 277, 280, 956
TspDTI	ATGAA	4 cut(s)	341, 571, 804, 1027
TspRI	CASTG	4 cut(s)	223, 718, 814, 900
Van91I	CCANNNNNTGG	1 cut(s)	855
VpaK11BI	GGWCC	2 cut(s)	74, 494
XapI	RAATTY	2 cut(s)	230, 320
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	683
XspI	CTAG	2 cut(s)	203, 953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.