Rh3BG369200

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002050
Physical Location & Seq
Forward (+)
46276128 .. 46282869
6742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG369200.1

Sequence Viewer

Length: 741 bp
ATGATAAATGGTTGTATTGAGTTTGATTGCTCAGTGACTAAAATAGTATTAGCATGGTTGTTATCAAAAATTCGTGCTAGGATTATTGAATCACAGGTTTTACTCCATCTAAGAAGACTATTTATATTGCTTTGCATGATTAGTCTTATACCTCCTCCAACCATTCCACCCAATGTGAAGCCGGGAGTCCTGACTTCTCCGAACTATTCTATTACGAGTAGGAAACAATTGCTTGCAAACCACTTCAAACTCACTGTGAAAGCTCCAGATTCTGTATTTTACCAATATTCTGTTCATATTACTTCTGAAAGCAAGAAGGCCGCTCACGGCAAGGGAATTGGCAGAAAACTGGTTGACAGGCTCTATCAAACATATTCTTCTAAACTTGCTGATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTATATACAGTTGGTCCTCTGCCGCAGAACAAGCTTGACTTTACAGTTCCCCTGGAGGAGGCATTTGCAAAGAGGAAACATAAAACAGAAGAAGTGTTGCTGGGTTTGGGATTTCAGTGGTTGAAGTTTGTTTATGTGTTCTATGTGATATATGGAATATATATACCAGAAATGATTTTGATAGTAGCTTTGTTCCAATTTTTGTGTAATGGTGCCATATCTTGCCATACTTATATCAAGTGGTATTATGGATGGGATCGTTTTCAATATTTATTAAAAAGATTCTTGATTGTACCGGTGTTTTTCCATTTGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

246

Amino Acids

28.59

Weight (kDa)

9.64

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 76 - 166 1.2e-17 N-terminal domain of argonaute
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 635
AccBSI CCGCTC 1 cut(s) 323
AciI CCGC 2 cut(s) 321, 446
AclWI GGATC 1 cut(s) 687
AcsI RAATTY 1 cut(s) 69
AfaI GTAC 1 cut(s) 717
AfiI CCNNNNNNNGG 1 cut(s) 481
AgeI ACCGGT 1 cut(s) 718
AgsI TTSAA 4 cut(s) 89, 247, 547, 689
AjnI CCWGG 1 cut(s) 474
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 4 cut(s) 263, 422, 457, 611
AluI AGCT 4 cut(s) 263, 422, 457, 611
AlwI GGATC 1 cut(s) 687
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 69
AsiGI ACCGGT 1 cut(s) 718
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 437
BanI GGYRCC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 121
BccI CCATC 2 cut(s) 114, 669
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 476
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 2 cut(s) 78, 739
BisI GCNGC 2 cut(s) 321, 446
BlsI GCNGC 2 cut(s) 322, 447
Bme1390I CCNGG 2 cut(s) 183, 476
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 2 cut(s) 183, 476
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 2 cut(s) 249, 497
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 718
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse118I RCCGGY 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 680
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 354
BseRI GAGGAG 2 cut(s) 144, 494
BseYI CCCAGC 1 cut(s) 523
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 635
BshTI ACCGGT 1 cut(s) 718
BsiSI CCGG 2 cut(s) 182, 719
BslI CCNNNNNNNGG 1 cut(s) 481
BsnI GGCC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 679
BspACI CCGC 2 cut(s) 321, 446
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 637
BspPI GGATC 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 718
BsrI ACTGG 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 1 cut(s) 474
BssMI GATC 1 cut(s) 679
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 3 cut(s) 256, 433, 469
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 31, 110
BstENI CCTNNNNNAGG 1 cut(s) 479
BstF5I GGATG 1 cut(s) 680
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 1 cut(s) 682
BstMBI GATC 1 cut(s) 679
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 181, 474
BstV2I GAAGAC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 680
BtsIMutI CAGTG 3 cut(s) 39, 252, 545
Cac8I GCNNGC 1 cut(s) 234
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 738
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 716
CspAI ACCGGT 1 cut(s) 718
CviAII CATG 2 cut(s) 54, 136
CviJI RGCY 7 cut(s) 181, 263, 320, 361, 422, 457, 611
CviKI_1 RGCY 7 cut(s) 181, 263, 320, 361, 422, 457, 611
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 2 cut(s) 31, 110
DpnI GATC 1 cut(s) 681
DpnII GATC 1 cut(s) 679
Eco47I GGWCC 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 474
FaeI CATG 2 cut(s) 57, 139
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FatI CATG 2 cut(s) 53, 135
Fnu4HI GCNGC 2 cut(s) 321, 446
FokI GGATG 1 cut(s) 687
Fsp4HI GCNGC 2 cut(s) 321, 446
FspBI CTAG 2 cut(s) 78, 739
GlaI GCGC 1 cut(s) 737
GluI GCNGC 2 cut(s) 321, 446
GsaI CCCAGC 1 cut(s) 527
GsuI CTGGAG 2 cut(s) 249, 497
HaeIII GGCC 1 cut(s) 320
HapII CCGG 2 cut(s) 182, 719
HhaI GCGC 1 cut(s) 738
Hin1II CATG 2 cut(s) 57, 139
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 4 cut(s) 89, 186, 269, 705
HpaII CCGG 2 cut(s) 182, 719
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 201, 307
Hpy188III TCNNGA 3 cut(s) 190, 266, 709
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 3 cut(s) 256, 433, 469
HpyCH4V TGCA 3 cut(s) 135, 236, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 2 cut(s) 31, 110
Hsp92II CATG 2 cut(s) 57, 139
HspAI GCGC 1 cut(s) 736
Kzo9I GATC 1 cut(s) 679
LmnI GCTCC 1 cut(s) 268
MaeI CTAG 2 cut(s) 78, 739
MaeIII GTNAC 1 cut(s) 34
MalI GATC 1 cut(s) 681
MbiI CCGCTC 1 cut(s) 323
MboI GATC 1 cut(s) 679
MboII GAAGA 3 cut(s) 126, 369, 524
MfeI CAATTG 1 cut(s) 227
MluCI AATT 4 cut(s) 69, 227, 336, 620
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 6 cut(s) 162, 165, 450, 472, 475, 489
MseI TTAA 1 cut(s) 698
MspI CCGG 2 cut(s) 182, 719
MspR9I CCNGG 2 cut(s) 183, 476
MunI CAATTG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 454
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 679
NlaIII CATG 2 cut(s) 57, 139
NlaIV GGNNCC 1 cut(s) 637
NmuCI GTSAC 1 cut(s) 34
PfeI GAWTC 3 cut(s) 89, 269, 705
PinAI ACCGGT 1 cut(s) 718
PkrI GCNGC 2 cut(s) 322, 447
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 523
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 637
PspPI GGNCC 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 2 cut(s) 321, 446
Sau3AI GATC 1 cut(s) 679
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 183, 476
SetI ASST 6 cut(s) 99, 154, 265, 424, 459, 613
SinI GGWCC 1 cut(s) 437
Sse9I AATT 4 cut(s) 69, 227, 336, 620
SsiI CCGC 2 cut(s) 321, 446
SspI AATATT 2 cut(s) 287, 692
SspMI CTAG 2 cut(s) 78, 739
StyD4I CCNGG 2 cut(s) 181, 474
TaaI ACNGT 3 cut(s) 256, 433, 469
TasI AATT 4 cut(s) 69, 227, 336, 620
TauI GCSGC 2 cut(s) 323, 448
TfiI GAWTC 3 cut(s) 89, 269, 705
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 3 cut(s) 39, 259, 545
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 3 cut(s) 39, 259, 545
VpaK11BI GGWCC 1 cut(s) 437
XagI CCTNNNNNAGG 1 cut(s) 479
XapI RAATTY 1 cut(s) 69
XspI CTAG 2 cut(s) 78, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.