Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Reverse (-)

28489531 .. 28490163

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCATCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAACAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGATCTTAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.25

Weight (kDa)

9.0

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	2 cut(s)	160, 394
AccIII	TCCGGA	1 cut(s)	621
AciI	CCGC	4 cut(s)	82, 402, 549, 628
AclWI	GGATC	4 cut(s)	188, 363, 382, 463
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	220, 476
AleI	CACNNNNGTG	1 cut(s)	558
AluBI	AGCT	3 cut(s)	130, 193, 608
AluI	AGCT	3 cut(s)	130, 193, 608
AlwI	GGATC	4 cut(s)	188, 363, 382, 463
Ama87I	CYCGRG	1 cut(s)	255
Aor13HI	TCCGGA	1 cut(s)	621
Asp700I	GAANNNNTTC	1 cut(s)	480
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 515
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	533
BccI	CCATC	3 cut(s)	26, 427, 533
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	2 cut(s)	160, 394
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	6, 155, 626
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse8I	GATNNNNATC	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	37, 50, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	54, 622
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	256, 300
Bsp13I	TCCGGA	1 cut(s)	621
Bsp143I	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
BspACI	CCGC	4 cut(s)	82, 402, 549, 628
BspEI	TCCGGA	1 cut(s)	621
BspLI	GGNNCC	3 cut(s)	6, 155, 626
BspMI	ACCTGC	2 cut(s)	160, 394
BspPI	GGATC	4 cut(s)	188, 363, 382, 463
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
Bst4CI	ACNGT	2 cut(s)	163, 557
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	37, 50, 292
BstKTI	GATC	8 cut(s)	109, 183, 213, 311, 358, 377, 458, 583
BstMBI	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	3 cut(s)	180, 374, 455
BstYI	RGATCY	3 cut(s)	180, 374, 455
BtsCI	GGATG	3 cut(s)	37, 50, 292
BveI	ACCTGC	2 cut(s)	160, 394
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	8 cut(s)	70, 293, 301, 350, 466, 496, 500, 523
CviJI	RGCY	8 cut(s)	130, 193, 254, 316, 564, 588, 608, 627
CviKI_1	RGCY	8 cut(s)	130, 193, 254, 316, 564, 588, 608, 627
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	8 cut(s)	108, 182, 212, 310, 357, 376, 457, 582
DpnII	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	8 cut(s)	69, 292, 300, 349, 465, 495, 499, 522
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	3 cut(s)	37, 44, 299
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	628
GluI	GCNGC	1 cut(s)	628
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	2 cut(s)	54, 622
Hin1II	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	94, 117
HpaI	GTTAAC	1 cut(s)	424
HpaII	CCGG	2 cut(s)	54, 622
HphI	GGTGA	2 cut(s)	335, 515
Hpy166II	GTNNAC	4 cut(s)	93, 244, 279, 424
Hpy188I	TCNGA	3 cut(s)	111, 286, 538
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 622
Hpy8I	GTNNAC	4 cut(s)	93, 244, 279, 424
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	2 cut(s)	163, 557
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
Kpn2I	TCCGGA	1 cut(s)	621
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
LmnI	GCTCC	2 cut(s)	127, 624
LweI	GCATC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	334, 551
MalI	GATC	8 cut(s)	108, 182, 212, 310, 357, 376, 457, 582
MboI	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
MboII	GAAGA	5 cut(s)	280, 283, 369, 390, 538
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	3 cut(s)	180, 374, 455
MhlI	GDGCHC	2 cut(s)	256, 300
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 346, 495, 499, 536, 592
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	2 cut(s)	366, 423
MslI	CAYNNNNRTG	1 cut(s)	558
MspA1I	CMGCKG	3 cut(s)	193, 404, 630
MspI	CCGG	2 cut(s)	54, 622
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 401, 594
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
NlaIII	CATG	8 cut(s)	73, 296, 304, 353, 469, 499, 503, 526
NlaIV	GGNNCC	3 cut(s)	6, 155, 626
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	558
PaqCI	CACCTGC	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	629
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 626
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	180, 374, 455
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	366, 423
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	8 cut(s)	106, 180, 210, 308, 355, 374, 455, 580
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	256, 300
SetI	ASST	9 cut(s)	92, 132, 155, 174, 195, 228, 388, 547, 610
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	82, 402, 549, 628
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	163, 557
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	366, 423
Tru9I	TTAA	2 cut(s)	366, 423
TseFI	GTSAC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	281, 476, 539
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.