Rh1AG409700

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002050
Physical Location & Seq
Forward (+)
63908954 .. 63911275
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG409700.1

Sequence Viewer

Length: 369 bp
ATGGTTCATATTACTTCTGAAAACAAGAAGGCCGCTCAAGGCAAGGGAATTGGCAGAAAACTGGTTGACAAGCTCTATCAAACATATTCTTCTAAACTTGCTAATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTGTATACAGTTGGTCCTCTGCCGCAGAACAAGCGTGACTTTACAGTTCCCCTGGAGGAGACATTTGCAAAGAGGCCTTCCAGTGCGCAATCGAGCAGGTCTGAGGGTCCTGCGCTGCATGGGATTGAGAATGTGGTAAAGCCGAGGCCGAAAGTAAACCCTTTTGGGGATGCCAAGCCGAGGGAAGTGTTACTGGAGGAGCGAGGTAAGGATTGGAGGAAGATTGATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

122

Amino Acids

13.79

Weight (kDa)

9.82

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 12 - 75 1.5e-10 N-terminal domain of argonaute
eIF-4B PF06273 68 - 122 1.1e-27 Plant specific eukaryotic initiation factor 4B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 222
Acc36I ACCTGC 1 cut(s) 222
AccBSI CCGCTC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 140
AciI CCGC 2 cut(s) 33, 158
AfiI CCNNNNNNNGG 2 cut(s) 301, 315
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 2 cut(s) 73, 134
AluI AGCT 2 cut(s) 73, 134
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 3 cut(s) 30, 209, 281
ApeKI GCWGC 1 cut(s) 250
AspLEI GCGC 2 cut(s) 223, 250
AspS9I GGNCC 2 cut(s) 149, 242
AvaII GGWCC 2 cut(s) 149, 242
BbvI GCAGC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 222
BisI GCNGC 3 cut(s) 33, 158, 251
BlsI GCNGC 3 cut(s) 34, 159, 252
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 2 cut(s) 149, 242
BmgT120I GGNCC 2 cut(s) 149, 242
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 295
BpmI CTGGAG 2 cut(s) 209, 350
BpuEI CTTGAG 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 186, 278, 314
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 315
Bse1I ACTGG 3 cut(s) 66, 216, 333
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 186, 278, 314
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 301, 315
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 3 cut(s) 66, 216, 333
BseRI GAGGAG 2 cut(s) 206, 347
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 3 cut(s) 32, 211, 283
BslI CCNNNNNNNGG 2 cut(s) 301, 315
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 3 cut(s) 32, 211, 283
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 2 cut(s) 33, 158
BspANI GGCC 3 cut(s) 32, 211, 283
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 222
BsrBI CCGCTC 1 cut(s) 35
BsrI ACTGG 3 cut(s) 66, 216, 333
BssECI CCNNGG 3 cut(s) 186, 278, 314
BssMI GATC 1 cut(s) 361
BssNAI GTATAC 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 145, 181
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 310
BstHHI GCGC 2 cut(s) 223, 250
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 237
BstZ17I GTATAC 1 cut(s) 141
BsuRI GGCC 3 cut(s) 32, 211, 283
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 223
BveI ACCTGC 1 cut(s) 222
CfoI GCGC 2 cut(s) 223, 250
Cfr13I GGNCC 2 cut(s) 149, 242
CviAII CATG 1 cut(s) 254
CviJI RGCY 7 cut(s) 32, 73, 134, 211, 277, 283, 313
CviKI_1 RGCY 7 cut(s) 32, 73, 134, 211, 277, 283, 313
DdeI CTNAG 1 cut(s) 237
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 211
Eco47I GGWCC 2 cut(s) 149, 242
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 257
FaiI YATR 5 cut(s) 9, 85, 120, 141, 255
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 33, 158, 251
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 33, 158, 251
FspI TGCGCA 1 cut(s) 222
GlaI GCGC 2 cut(s) 222, 249
GluI GCNGC 3 cut(s) 33, 158, 251
GsuI CTGGAG 2 cut(s) 209, 350
HaeIII GGCC 3 cut(s) 32, 211, 283
HhaI GCGC 2 cut(s) 223, 250
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 2 cut(s) 221, 248
HinP1I GCGC 2 cut(s) 221, 248
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 67, 141, 292
Hpy188I TCNGA 2 cut(s) 19, 238
Hpy8I GTNNAC 3 cut(s) 67, 141, 292
HpyAV CCTTC 2 cut(s) 22, 222
HpyCH4III ACNGT 2 cut(s) 145, 181
HpyCH4V TGCA 2 cut(s) 203, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 2 cut(s) 221, 248
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 7 cut(s) 47, 173, 200, 217, 229, 258, 314
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 170, 324
MalI GATC 1 cut(s) 363
MbiI CCGCTC 1 cut(s) 35
MboI GATC 1 cut(s) 361
MboII GAAGA 2 cut(s) 81, 367
MluCI AATT 1 cut(s) 48
MnlI CCTC 9 cut(s) 162, 184, 201, 232, 273, 309, 325, 332, 345
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 1 cut(s) 361
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 243
NmeAIII GCCGAG 2 cut(s) 303, 339
NmuCI GTSAC 1 cut(s) 170
NsbI TGCGCA 1 cut(s) 222
PceI AGGCCT 1 cut(s) 211
PkrI GCNGC 3 cut(s) 34, 159, 252
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 149, 242
PspPPI RGGWCCY 1 cut(s) 242
SatI GCNGC 3 cut(s) 33, 158, 251
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 2 cut(s) 149, 242
ScrFI CCNGG 1 cut(s) 188
SetI ASST 4 cut(s) 75, 136, 236, 343
SfaNI GCATC 1 cut(s) 295
SinI GGWCC 2 cut(s) 149, 242
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 1 cut(s) 48
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 2 cut(s) 33, 158
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 145, 181
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 48
TauI GCSGC 2 cut(s) 35, 160
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 170
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 2 cut(s) 149, 242
XmiI GTMKAC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.