Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Forward (+)

72851850 .. 72852796

Gene Structure 947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGCTCTATCAAACATATTCTTCTAAACTTGCTGATAACAAGTTTGTGTATGATGAAGAGAAAGCTCTATATACAGTTGGTCCTCTTCCGCAGAACAAGCTTGACTTTACAGTTCCCCTGGAGGAGACATTTGCAAAGAGAAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

49

Amino Acids

5.76

Weight (kDa)

6.11

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArgoN	PF16486	4 - 42	3.4e-06	N-terminal domain of argonaute

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	2 cut(s)	65, 100
AluI	AGCT	2 cut(s)	65, 100
Alw26I	GTCTC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	119
BspACI	CCGC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	76, 112
Bst6I	CTCTTC	2 cut(s)	51, 90
BstMAI	GTCTC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	80
CviJI	RGCY	2 cut(s)	65, 100
CviKI_1	RGCY	2 cut(s)	65, 100
Eam1104I	CTCTTC	2 cut(s)	51, 90
EarI	CTCTTC	2 cut(s)	51, 90
Eco47I	GGWCC	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	117
FaiI	YATR	4 cut(s)	16, 51, 70, 72
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FspEI	CC	8 cut(s)	63, 96, 102, 104, 107, 129, 130, 131
GsuI	CTGGAG	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	76, 112
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
LpnPI	CCDG	2 cut(s)	104, 131
MboII	GAAGA	3 cut(s)	12, 68, 77
MnlI	CCTC	2 cut(s)	93, 115
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	2 cut(s)	67, 102
SgeI	CNNG	6 cut(s)	41, 52, 109, 113, 130, 131
SinI	GGWCC	1 cut(s)	80
SsiI	CCGC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	76, 112
TspDTI	ATGAA	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.