Rh2BG176800

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002050
Physical Location & Seq
Forward (+)
15703051 .. 15704149
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG176800.1

Sequence Viewer

Length: 408 bp
ATGCTTTGCATGATTAGTCTTATACCTCCTCCAACCATTCCACCCAATGTGAAGCCAGGAGTCCTGACTTCTCCGAAGTATTCTATTACGAGTAGGAAACAATTGCTTGCAAACCACTTCAAACTCACTGTGAAAGCTCCAGATTTTGTATTTTACCAATATTCTGTTCATATTACTTCTGAAAACAAGAAGGCCGCTCAAGGCAAGGGAATTGGCAGAAAACTGGTTGACAGGCTCTATCAAACATATTCTTCTAAACTTGCTGATAACAAGTTTGTGTATGATAAAGAGAAAGCTCTATATACAGTTGGTCCTCTGCCGCAGAACAAGCTTGACTTTACAGTTCCCCTGGAGGAGACATTTGCAAAGAGAGTGAAAAAGTGGAGCCTAACAATACGAAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

135

Amino Acids

15.39

Weight (kDa)

9.93

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 34 - 119 6.9e-18 N-terminal domain of argonaute
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 197
AciI CCGC 2 cut(s) 195, 320
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 55, 348
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 3 cut(s) 137, 296, 331
AluI AGCT 3 cut(s) 137, 296, 331
Alw26I GTCTC 1 cut(s) 350
AoxI GGCC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 311
AvaII GGWCC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 57, 350
BcoDI GTCTC 1 cut(s) 350
BisI GCNGC 2 cut(s) 195, 320
BlsI GCNGC 2 cut(s) 196, 321
Bme1390I CCNGG 2 cut(s) 57, 350
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 2 cut(s) 57, 350
BpmI CTGGAG 2 cut(s) 123, 371
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 57, 350
BseDI CCNNGG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 2 cut(s) 18, 368
BshFI GGCC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 350
BsnI GGCC 1 cut(s) 194
BspACI CCGC 2 cut(s) 195, 320
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 386
BsrBI CCGCTC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 57, 350
Bst4CI ACNGT 3 cut(s) 130, 307, 343
BstC8I GCNNGC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 350
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 2 cut(s) 57, 350
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 55, 348
BsuRI GGCC 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 311
CviAII CATG 2 cut(s) 10, 403
CviJI RGCY 7 cut(s) 55, 137, 194, 235, 296, 331, 387
CviKI_1 RGCY 7 cut(s) 55, 137, 194, 235, 296, 331, 387
Eco47I GGWCC 1 cut(s) 311
EcoRII CCWGG 2 cut(s) 55, 348
FaeI CATG 2 cut(s) 13, 406
FaiI YATR 8 cut(s) 11, 23, 171, 247, 282, 301, 303, 404
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 2 cut(s) 9, 402
Fnu4HI GCNGC 2 cut(s) 195, 320
Fsp4HI GCNGC 2 cut(s) 195, 320
GluI GCNGC 2 cut(s) 195, 320
GsuI CTGGAG 2 cut(s) 123, 371
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 2 cut(s) 13, 406
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 75, 181
Hpy188III TCNNGA 2 cut(s) 64, 140
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 3 cut(s) 130, 307, 343
HpyCH4V TGCA 3 cut(s) 9, 110, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
Hsp92II CATG 2 cut(s) 13, 406
LmnI GCTCC 2 cut(s) 142, 384
LpnPI CCDG 8 cut(s) 42, 69, 77, 153, 209, 217, 335, 362
MbiI CCGCTC 1 cut(s) 197
MboII GAAGA 1 cut(s) 243
MfeI CAATTG 1 cut(s) 101
MluCI AATT 2 cut(s) 101, 210
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 4 cut(s) 36, 39, 324, 346
MspR9I CCNGG 2 cut(s) 57, 350
MunI CAATTG 1 cut(s) 101
MvaI CCWGG 2 cut(s) 57, 350
MwoI GCNNNNNNNGC 1 cut(s) 328
NlaIII CATG 2 cut(s) 13, 406
NlaIV GGNNCC 1 cut(s) 386
NspI RCATGY 1 cut(s) 406
PciI ACATGT 1 cut(s) 402
PkrI GCNGC 2 cut(s) 196, 321
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PscI ACATGT 1 cut(s) 402
Psp6I CCWGG 2 cut(s) 55, 348
PspGI CCWGG 2 cut(s) 55, 348
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 311
SatI GCNGC 2 cut(s) 195, 320
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 57, 350
SetI ASST 4 cut(s) 28, 139, 298, 333
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 2 cut(s) 101, 210
SsiI CCGC 2 cut(s) 195, 320
SspI AATATT 1 cut(s) 161
StyD4I CCNGG 2 cut(s) 55, 348
TaaI ACNGT 3 cut(s) 130, 307, 343
TasI AATT 2 cut(s) 101, 210
TauI GCSGC 2 cut(s) 197, 322
TscAI CASTG 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 311
XceI RCATGY 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.