Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002050

Physical Location & Seq

Genomic Coordinates Reverse (-)

37221656 .. 37235975

Gene Structure 14320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG302300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATGCTCAGCACGATCTAAATCTGCATTGTGTGGCGCACACTCGAGCACAGACCCTATGTGGCCCCAGCGGTCTTCTGCGACAGAGTGAGGCCGATCCGAGAGAGAGAGAGGAAGAGCAGGAGACGGGAAGAGCCATCAAACTCTCAGATAGAATTTTAGCTTTTTCGCGGAGCCTCGATCGACATCCATCTTCACTATTTCGTAGGATATTCGTCTTTTATACTGGTGGATTACAGTTGTCAGTATTGTGGACTGGAGTATCTGCCTGTTTTTGCTTCCTTGATTGGATCTTGCTGTTTTATGTTTTTTATGGTTTTGTTGTCAATGGTTTGAAGTTATGGTTTGAGGTTTACAATAGTGACCACAATAAAGTTCCTTGGTTTGCTGAGTTCTCCTTTGATTCAAGTTTGGAAGAAGATAATAAATTTAAAAATAATAGAGTGGCTATGGGTGTTAGTATATCTGGAGAAGATTATGGTGTCAGTATGGTTAGAGCTGCTGAGCTTCGGCAAATACTAGTAGAACTTGGACCGGCGTATATCAAAATCGCTCAGGCTATTTCGTCTCGACCTAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACATGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACTGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGCGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.57

Weight (kDa)

6.16

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002050)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0315571 RchiOBHm_Chr1g0374311 RchiOBHm_Chr5g0047891 RchiOBHm_Chr5g0060791 RchiOBHm_Chr5g0066751 RchiOBHm_Chr6g0272631
rosa_laevigata	RLG00000036779
rosa_multiflora	Rmu_sc0002889.1_g000033 Rmu_sc0006392.1_g000004 Rmu_sc0009734.1_g000006
rosa_roxburghii	Rroxscaffold_1G00047650 Rroxscaffold_2G00091830 Rroxscaffold_2G00145280 Rroxscaffold_3G00274360 Rroxscaffold_4G00295550 Rroxscaffold_6G00397480 Rroxscaffold_6G00399280 Rroxscaffold_7G00157790 Rroxscaffold_7G00200250
rosa_rugosa	Rorug02G0265200 Rorug02G0265300 Rorug02G0266300 Rorug02G0267300 Rorug02G0267900 Rorug02G0268700 Rorug02G0269400 Rorug03G0246800 Rorug03G0247400 Rorug04G0431800
rosa_samantha	Rh1AG015400 Rh1AG409700 Rh2AG293200 Rh2AG451400 Rh2BG176800 Rh2BG293700 Rh2CG415700 Rh2CG514600 Rh2DG317200 Rh3AG302300 Rh3BG369200 Rh3BG376300 Rh3DG335200 Rh3DG373000 Rh5BG325100 Rh7DG147200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	172
AciI	CCGC	3 cut(s)	72, 172, 691
AclWI	GGATC	3 cut(s)	92, 299, 634
AcsI	RAATTY	2 cut(s)	156, 428
AfaI	GTAC	1 cut(s)	671
AgsI	TTSAA	4 cut(s)	337, 408, 820, 835
AhlI	ACTAGT	1 cut(s)	520
AluBI	AGCT	5 cut(s)	164, 500, 508, 935, 963
AluI	AGCT	5 cut(s)	164, 500, 508, 935, 963
Alw21I	GWGCWC	2 cut(s)	52, 583
Alw26I	GTCTC	4 cut(s)	119, 573, 677, 843
AlwI	GGATC	3 cut(s)	92, 299, 634
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	2 cut(s)	64, 93
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	2 cut(s)	156, 428
Asp700I	GAANNNNTTC	1 cut(s)	921
AspA2I	CCTAGG	1 cut(s)	724
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	65, 533
AsuHPI	GGTGA	2 cut(s)	740, 907
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	533
AvrII	CCTAGG	1 cut(s)	724
BaeI	ACNNNNGTAYC	2 cut(s)	246, 279
BbsI	GAAGAC	2 cut(s)	68, 598
Bbv12I	GWGCWC	2 cut(s)	52, 583
BbvCI	CCTCAGC	1 cut(s)	944
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	4 cut(s)	146, 199, 820, 907
BclI	TGATCA	1 cut(s)	954
BcoDI	GTCTC	4 cut(s)	119, 573, 677, 843
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	3 cut(s)	521, 576, 725
BglI	GCCNNNNNGGC	1 cut(s)	649
BisI	GCNGC	1 cut(s)	501
BlnI	CCTAGG	1 cut(s)	724
BlpI	GCTNAGC	2 cut(s)	9, 504
BlsI	GCNGC	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	45
BmgT120I	GGNCC	2 cut(s)	65, 533
BmiI	GGNNCC	2 cut(s)	67, 176
BpiI	GAAGAC	2 cut(s)	68, 598
BpmI	CTGGAG	2 cut(s)	279, 489
Bpu10I	CCTNAGC	2 cut(s)	555, 944
Bpu1102I	GCTNAGC	2 cut(s)	9, 504
BpuEI	CTTGAG	1 cut(s)	825
BsaBI	GATNNNNATC	2 cut(s)	21, 186
BsaJI	CCNNGG	3 cut(s)	380, 724, 900
BsaXI	ACNNNNNCTCC	2 cut(s)	793, 823
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	3 cut(s)	232, 262, 644
Bse3DI	GCAATG	2 cut(s)	686, 786
Bse8I	GATNNNNATC	2 cut(s)	21, 186
BseDI	CCNNGG	3 cut(s)	380, 724, 900
BseGI	GGATG	3 cut(s)	10, 187, 910
BseJI	GATNNNNATC	2 cut(s)	21, 186
BseMI	GCAATG	2 cut(s)	686, 786
BseMII	CTCAG	9 cut(s)	23, 162, 381, 495, 569, 669, 918, 927, 958
BseNI	ACTGG	3 cut(s)	232, 262, 644
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	66, 95
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	52, 583
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	721, 783
BsmAI	GTCTC	4 cut(s)	119, 573, 677, 843
BsmBI	CGTCTC	2 cut(s)	119, 573
BsmFI	GGGAC	2 cut(s)	721, 783
BsnI	GGCC	2 cut(s)	66, 95
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	52, 583
Bsp143I	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
Bsp1720I	GCTNAGC	2 cut(s)	9, 504
BspACI	CCGC	3 cut(s)	72, 172, 691
BspANI	GGCC	2 cut(s)	66, 95
BspCNI	CTCAG	9 cut(s)	22, 161, 382, 496, 568, 670, 919, 928, 957
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	67, 176
BspPI	GGATC	3 cut(s)	92, 299, 634
BspQI	GCTCTTC	2 cut(s)	111, 127
BsrDI	GCAATG	2 cut(s)	686, 786
BsrFI	RCCGGY	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	232, 262, 644
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	3 cut(s)	380, 724, 900
BssMI	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
BssT1I	CCWWGG	3 cut(s)	380, 724, 900
Bst4CI	ACNGT	2 cut(s)	240, 717
Bst6I	CTCTTC	2 cut(s)	111, 127
BstAPI	GCANNNNNTGC	1 cut(s)	707
BstDEI	CTNAG	9 cut(s)	9, 148, 390, 504, 555, 678, 927, 936, 944
BstEII	GGTNACC	1 cut(s)	895
BstF5I	GGATG	3 cut(s)	10, 187, 910
BstFNI	CGCG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	7 cut(s)	19, 100, 184, 294, 629, 733, 957
BstMAI	GTCTC	4 cut(s)	119, 573, 677, 843
BstMBI	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	649, 707
BstPI	GGTNACC	1 cut(s)	895
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	2 cut(s)	68, 598
BstX2I	RGATCY	2 cut(s)	291, 626
BstYI	RGATCY	2 cut(s)	291, 626
BsuRI	GGCC	2 cut(s)	66, 95
BtsCI	GGATG	3 cut(s)	10, 187, 910
CaiI	CAGNNNCTG	1 cut(s)	707
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	65, 533
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	1 cut(s)	623
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	9 cut(s)	9, 148, 390, 504, 555, 678, 927, 936, 944
DpnI	GATC	7 cut(s)	18, 99, 183, 293, 628, 732, 956
DpnII	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
DraI	TTTAAA	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	111, 127
EarI	CTCTTC	2 cut(s)	111, 127
Eco130I	CCWWGG	3 cut(s)	380, 724, 900
Eco47I	GGWCC	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	45
Eco91I	GGTNACC	1 cut(s)	895
EcoO65I	GGTNACC	1 cut(s)	895
EcoT14I	CCWWGG	3 cut(s)	380, 724, 900
ErhI	CCWWGG	3 cut(s)	380, 724, 900
Esp3I	CGTCTC	2 cut(s)	119, 573
FaeI	CATG	1 cut(s)	626
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	2 cut(s)	721, 783
FatI	CATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	954
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	3 cut(s)	17, 174, 917
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	3 cut(s)	521, 576, 725
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	501
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	2 cut(s)	279, 489
HaeIII	GGCC	2 cut(s)	66, 95
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	626
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	5 cut(s)	404, 674, 704, 785, 806
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	740, 907
Hpy166II	GTNNAC	3 cut(s)	255, 355, 670
Hpy188I	TCNGA	3 cut(s)	102, 151, 679
Hpy188III	TCNNGA	4 cut(s)	468, 570, 659, 926
Hpy8I	GTNNAC	3 cut(s)	255, 355, 670
HpyCH4III	ACNGT	2 cut(s)	240, 717
HpyCH4V	TGCA	5 cut(s)	28, 701, 710, 779, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	649, 707
HpyF3I	CTNAG	9 cut(s)	9, 148, 390, 504, 555, 678, 927, 936, 944
Hsp92II	CATG	1 cut(s)	626
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	954
Kzo9I	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
LguI	GCTCTTC	2 cut(s)	111, 127
LmnI	GCTCC	2 cut(s)	174, 766
Lsp1109I	GCAGC	1 cut(s)	487
MaeI	CTAG	3 cut(s)	521, 576, 725
MaeIII	GTNAC	4 cut(s)	362, 614, 799, 895
MalI	GATC	7 cut(s)	18, 99, 183, 293, 628, 732, 956
MboI	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
MboII	GAAGA	9 cut(s)	68, 128, 144, 186, 428, 431, 485, 593, 603
MflI	RGATCY	2 cut(s)	291, 626
MhlI	GDGCHC	2 cut(s)	52, 583
MluCI	AATT	5 cut(s)	156, 428, 824, 867, 908
MlyI	GAGTC	3 cut(s)	683, 794, 800
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	7 cut(s)	85, 106, 188, 343, 673, 874, 953
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	2 cut(s)	432, 863
MspA1I	CMGCKG	1 cut(s)	72
MspI	CCGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	649, 707
NdeII	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
NlaIII	CATG	1 cut(s)	626
NlaIV	GGNNCC	2 cut(s)	67, 176
NmuCI	GTSAC	3 cut(s)	362, 799, 895
PaeR7I	CTCGAG	1 cut(s)	45
PciSI	GCTCTTC	2 cut(s)	111, 127
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	404, 704
PkrI	GCNGC	1 cut(s)	502
Ple19I	CGATCG	1 cut(s)	184
PleI	GAGTC	3 cut(s)	682, 793, 800
PpsI	GAGTC	3 cut(s)	682, 793, 800
PspEI	GGTNACC	1 cut(s)	895
PspFI	CCCAGC	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	67, 176
PspPI	GGNCC	2 cut(s)	65, 533
PspXI	VCTCGAGB	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	2 cut(s)	291, 626
PvuI	CGATCG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
SapI	GCTCTTC	2 cut(s)	111, 127
SaqAI	TTAA	2 cut(s)	432, 863
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	7 cut(s)	16, 97, 181, 291, 626, 730, 954
Sau96I	GGNCC	2 cut(s)	65, 533
SchI	GAGTC	3 cut(s)	683, 794, 800
SduI	GDGCHC	2 cut(s)	52, 583
SetI	ASST	8 cut(s)	166, 354, 502, 510, 577, 730, 937, 965
Sfr274I	CTCGAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	45, 840
SmoI	CTYRAG	2 cut(s)	45, 840
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	5 cut(s)	156, 428, 824, 867, 908
SsiI	CCGC	3 cut(s)	72, 172, 691
SspI	AATATT	1 cut(s)	920
SspMI	CTAG	3 cut(s)	521, 576, 725
StyI	CCWWGG	3 cut(s)	380, 724, 900
TaaI	ACNGT	2 cut(s)	240, 717
TaqI	TCGA	4 cut(s)	46, 180, 184, 571
TaqII	GACCGA	1 cut(s)	818
TasI	AATT	5 cut(s)	156, 428, 824, 867, 908
TfiI	GAWTC	2 cut(s)	404, 704
Tru1I	TTAA	2 cut(s)	432, 863
Tru9I	TTAA	2 cut(s)	432, 863
TseFI	GTSAC	3 cut(s)	362, 799, 895
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	3 cut(s)	362, 799, 895
TspDTI	ATGAA	1 cut(s)	921
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	2 cut(s)	156, 428
XhoI	CTCGAG	1 cut(s)	45
XmaJI	CCTAGG	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	3 cut(s)	521, 576, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.