Rroxscaffold_2G00091830

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002050
Physical Location & Seq
Forward (+)
13361111 .. 13361675
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091830.1

Sequence Viewer

Length: 453 bp
ATGGTAGCTGGTGCCGAAAATGCAGGTGGGGACGAAGATTTGCCCCCACACCCTCCAACCATACCATCCAATTTGAAGCCAGGACTAGTGGCTCCGCCCAAATATTCTATTATGACTAGGTCATGCAGGACTGGAACTACTGGACGGCGCATAACTTTGCTTGCAAACCACTTCAAAGTTTCAGTGAATAATCCAGATGCTGTTCACATGACTTATGAAGATAATAAGCCAGTTCTTCCGGGCATTGGAAGTGGGAGAAAATTGATGGATAGGCTTTATCAAACATACTCCGTGGAATTTGGTGGCAAAAAGTTTGCATATGATGGGGAGAAAGCTCTGTACACAGTTGGCCCTCTTCCGCTGCACAAGCTCAATTACACAGTTGTGCTAGAGGAATCAGTTTCTAGGCCACAGTATGCCTTCAACTTTCCTTTTCTTACTCTTGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0034641 GO:0035194 GO:0035197 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061980 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

150

Amino Acids

16.47

Weight (kDa)

8.99

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 49 - 132 2.7e-14 N-terminal domain of argonaute
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 11
AciI CCGC 2 cut(s) 95, 359
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 3 cut(s) 76, 175, 424
AhlI ACTAGT 1 cut(s) 85
AjnI CCWGG 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 383
AluBI AGCT 3 cut(s) 8, 335, 370
AluI AGCT 3 cut(s) 8, 335, 370
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 2 cut(s) 349, 407
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 1 cut(s) 296
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 240
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 348
BccI CCATC 3 cut(s) 73, 259, 317
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 240
BcuI ACTAGT 1 cut(s) 85
BfaI CTAG 4 cut(s) 86, 117, 389, 405
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 1 cut(s) 362
BlsI GCNGC 1 cut(s) 363
Bme1390I CCNGG 2 cut(s) 81, 240
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 13, 93
BmrFI CCNGG 2 cut(s) 81, 240
BmsI GCATC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 3 cut(s) 136, 145, 230
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 3 cut(s) 136, 145, 230
BseXI GCAGC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 2 cut(s) 351, 409
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 2 cut(s) 351, 409
Bsp1407I TGTACA 1 cut(s) 339
BspACI CCGC 2 cut(s) 95, 359
BspANI GGCC 2 cut(s) 351, 409
BspLI GGNNCC 2 cut(s) 13, 93
BspMI ACCTGC 1 cut(s) 14
BspT107I GGYRCC 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 339
BsrI ACTGG 3 cut(s) 136, 145, 230
BssECI CCNNGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 3 cut(s) 346, 382, 414
Bst6I CTCTTC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 20, 367
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 79, 238
BstV1I GCAGC 1 cut(s) 348
BsuRI GGCC 2 cut(s) 351, 409
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 189
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 123, 208
CviJI RGCY 9 cut(s) 8, 79, 92, 229, 274, 335, 351, 370, 409
CviKI_1 RGCY 9 cut(s) 8, 79, 92, 229, 274, 335, 351, 370, 409
CviQI GTAC 1 cut(s) 340
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 2 cut(s) 126, 211
FaqI GGGAC 1 cut(s) 44
FatI CATG 2 cut(s) 122, 207
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 362
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 362
FspBI CTAG 4 cut(s) 86, 117, 389, 405
GlaI GCGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 362
HaeIII GGCC 2 cut(s) 351, 409
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 126, 211
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 1 cut(s) 395
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 205, 342
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 205, 342
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 3 cut(s) 346, 382, 414
HpyCH4V TGCA 5 cut(s) 23, 126, 164, 317, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 367
Hsp92II CATG 2 cut(s) 126, 211
HspAI GCGC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 9 cut(s) 9, 66, 93, 112, 117, 126, 207, 243, 252
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 1 cut(s) 187
MaeI CTAG 4 cut(s) 86, 117, 389, 405
MboII GAAGA 4 cut(s) 47, 227, 230, 347
MluCI AATT 4 cut(s) 70, 260, 296, 373
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 3 cut(s) 63, 363, 385
MseI TTAA 1 cut(s) 451
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 361
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 81, 240
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 20, 367
NciI CCSGG 1 cut(s) 240
NdeI CATATG 1 cut(s) 319
NlaIII CATG 2 cut(s) 126, 211
NlaIV GGNNCC 2 cut(s) 13, 93
OliI CACNNNNGTG 1 cut(s) 383
PaqCI CACCTGC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 395
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 13, 93
PspPI GGNCC 1 cut(s) 350
PstNI CAGNNNCTG 1 cut(s) 200
PsyI GACNNNGTC 1 cut(s) 118
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 1 cut(s) 362
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 81, 240
SetI ASST 5 cut(s) 10, 28, 122, 337, 372
SfaNI GCATC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 85
Sse9I AATT 4 cut(s) 70, 260, 296, 373
SsiI CCGC 2 cut(s) 95, 359
SspI AATATT 1 cut(s) 104
SspMI CTAG 4 cut(s) 86, 117, 389, 405
StyD4I CCNGG 2 cut(s) 79, 238
TaaI ACNGT 3 cut(s) 346, 382, 414
TasI AATT 4 cut(s) 70, 260, 296, 373
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TscAI CASTG 1 cut(s) 189
TseI GCWGC 1 cut(s) 361
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 118
XapI RAATTY 1 cut(s) 296
XspI CTAG 4 cut(s) 86, 117, 389, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.