Rh2DG317200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
39422252 .. 39425787
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG317200.1

Sequence Viewer

Length: 222 bp
ATGTATCGGAAGTGTGCAGAAGAGAAGAGAGCAGGAGACGGGAAGAGCTCAATTCAAGTTTTTTATGACAGTCATCAAATGTACTACCCAGCCATCAAACTCTCAGATAGAATTTTAGCTTTTTCGCGAAGCCTCGATCGACATCCATCTTCACTATTTCGTAGGATATTCGTCTTTTATACTGGTGGATTACAGTTGTCACGTGAAGCTGATCAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.55

Weight (kDa)

9.51

Isoelectric Point (pI)

71.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 127
AcsI RAATTY 1 cut(s) 111
AcvI CACGTG 1 cut(s) 203
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 4 cut(s) 48, 119, 209, 217
AluI AGCT 4 cut(s) 48, 119, 209, 217
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 111
BanII GRGCYC 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 50
BccI CCATC 2 cut(s) 101, 154
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 141
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 187
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 30
BsmBI CGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 136, 211
Bsp68I TCGCGA 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 1 cut(s) 127
BspQI GCTCTTC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 187
BssMI GATC 2 cut(s) 136, 211
Bst4CI ACNGT 2 cut(s) 71, 195
Bst6I CTCTTC 3 cut(s) 15, 20, 38
BstBAI YACGTR 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 127
BstKTI GATC 2 cut(s) 139, 214
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 136, 211
BstMCI CGRYCG 1 cut(s) 139
BstUI CGCG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 142
BtuMI TCGCGA 1 cut(s) 127
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 6 cut(s) 48, 92, 119, 132, 209, 217
CviKI_1 RGCY 6 cut(s) 48, 92, 119, 132, 209, 217
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 103
DpnI GATC 2 cut(s) 138, 213
DpnII GATC 2 cut(s) 136, 211
Eam1104I CTCTTC 3 cut(s) 15, 20, 38
EarI CTCTTC 3 cut(s) 15, 20, 38
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 48
Eco72I CACGTG 1 cut(s) 203
EcoICRI GAGCTC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 50
Esp3I CGTCTC 1 cut(s) 30
FaiI YATR 2 cut(s) 66, 180
FbaI TGATCA 1 cut(s) 211
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 92
Hpy188I TCNGA 3 cut(s) 9, 106, 221
Hpy188III TCNNGA 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 71, 195
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 136, 211
LguI GCTCTTC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 18, 102, 168
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 198
MalI GATC 2 cut(s) 138, 213
MboI GATC 2 cut(s) 136, 211
MboII GAAGA 4 cut(s) 32, 37, 55, 141
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 2 cut(s) 51, 111
MnlI CCTC 1 cut(s) 143
MvnI CGCG 1 cut(s) 127
NdeII GATC 2 cut(s) 136, 211
NmuCI GTSAC 1 cut(s) 198
NruI TCGCGA 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 38
Ple19I CGATCG 1 cut(s) 139
PmaCI CACGTG 1 cut(s) 203
PmlI CACGTG 1 cut(s) 203
Ppu21I YACGTR 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 50
PspCI CACGTG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 88
PvuI CGATCG 1 cut(s) 139
RruI TCGCGA 1 cut(s) 127
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SacI GAGCTC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 136, 211
SduI GDGCHC 1 cut(s) 50
SetI ASST 5 cut(s) 50, 121, 205, 211, 219
SgeI CNNG 9 cut(s) 45, 52, 68, 101, 138, 146, 195, 213, 215
Sse9I AATT 2 cut(s) 51, 111
SstI GAGCTC 1 cut(s) 50
TaaI ACNGT 2 cut(s) 71, 195
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 135, 139
TasI AATT 2 cut(s) 51, 111
TatI WGTACW 1 cut(s) 81
TseFI GTSAC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 198
XapI RAATTY 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.