Rorug02G0267400

THO complex subunit 4A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004491
Physical Location & Seq
Forward (+)
28224979 .. 28226796
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0267400.1

Sequence Viewer

Length: 393 bp
ATGGCTCCAGCGAAGAAGGGAAAGGCCAAGGCCAAACCTGCCGCCGCCACCGAGTCGACTCAGTCCTCCGCTACCAACAATTTCCCGGCATGTATTCGCTCCGTACCTCCCTCCTCCGTCGCCATCACCATCCACGCCAAGCCTGGCTCCAAACTCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGTGTCCAGATCGACGCCCCTGCAAAGGACGGCGAAGCTAACGCCGCCCTACTCGACTACATTAGTTCGGTTTTAGGTGTAAAAAGAAGGCAGCTTTCTATTGGATGTGGCTCTAAATCAAGAGACAAGGTTGTTATTGTAGAGGAGATGACTCTACAAAGTGTTTTTGACATTCTGGATAAAGCTTCAAAGTGCAGCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168
Pfam Domains
Protein Families
FoP_duplication RRM_1

Protein Analysis

130

Amino Acids

13.46

Weight (kDa)

9.05

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF167 PF02594 40 - 111 4.2e-20 Uncharacterised ACR, YggU family COG1872
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 46
AccI GTMKAC 1 cut(s) 56
AciI CCGC 4 cut(s) 42, 45, 69, 234
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 1 cut(s) 378
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 4 cut(s) 227, 283, 374, 387
AluI AGCT 4 cut(s) 227, 283, 374, 387
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 2 cut(s) 24, 30
ApeKI GCWGC 2 cut(s) 280, 384
AsuC2I CCSGG 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 118
BbvI GCAGC 1 cut(s) 292
BccI CCATC 3 cut(s) 131, 137, 170
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 5 cut(s) 42, 45, 234, 281, 385
BlsI GCNGC 5 cut(s) 43, 46, 235, 282, 386
Bme1390I CCNGG 2 cut(s) 86, 144
BmiI GGNNCC 2 cut(s) 6, 148
BmrFI CCNGG 2 cut(s) 86, 144
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 129, 299
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 103, 347
BseXI GCAGC 1 cut(s) 292
BshFI GGCC 2 cut(s) 26, 32
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 2 cut(s) 26, 32
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 4 cut(s) 42, 45, 69, 234
BspANI GGCC 2 cut(s) 26, 32
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 6, 148
BspMI ACCTGC 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 129, 299
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 38, 233
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 2 cut(s) 84, 142
BstV1I GCAGC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 26, 32
BtsCI GGATG 2 cut(s) 129, 299
BtsIMutI CAGTG 2 cut(s) 165, 181
BveI ACCTGC 1 cut(s) 46
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 90
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 93
FaiI YATR 2 cut(s) 91, 391
FatI CATG 1 cut(s) 89
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 5 cut(s) 42, 45, 234, 281, 385
FokI GGATG 2 cut(s) 116, 306
Fsp4HI GCNGC 5 cut(s) 42, 45, 234, 281, 385
GluI GCNGC 5 cut(s) 42, 45, 234, 281, 385
HaeIII GGCC 2 cut(s) 26, 32
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 93
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 3 cut(s) 53, 58, 340
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 57
Hpy188III TCNNGA 3 cut(s) 196, 309, 365
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 2 cut(s) 122, 206
HpyAV CCTTC 2 cut(s) 10, 270
HpyCH4V TGCA 2 cut(s) 212, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 233
HpyF3I CTNAG 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 93
Kzo9I GATC 1 cut(s) 198
LmnI GCTCC 3 cut(s) 10, 104, 152
LpnPI CCDG 8 cut(s) 21, 51, 99, 129, 156, 209, 222, 350
Lsp1109I GCAGC 1 cut(s) 292
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 79
MlyI GAGTC 3 cut(s) 52, 62, 334
MnlI CCTC 7 cut(s) 76, 117, 121, 124, 169, 175, 325
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 86, 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 38, 233
NciI CCSGG 1 cut(s) 86
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 2 cut(s) 6, 148
NspI RCATGY 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 5 cut(s) 43, 46, 235, 282, 386
PleI GAGTC 3 cut(s) 52, 61, 334
PpsI GAGTC 3 cut(s) 52, 61, 334
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 6, 148
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SalI GTCGAC 1 cut(s) 55
SatI GCNGC 5 cut(s) 42, 45, 234, 281, 385
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 3 cut(s) 52, 62, 334
ScrFI CCNGG 2 cut(s) 86, 144
SetI ASST 8 cut(s) 40, 109, 229, 268, 285, 321, 376, 389
Sse9I AATT 1 cut(s) 79
SsiI CCGC 4 cut(s) 42, 45, 69, 234
StyD4I CCNGG 2 cut(s) 84, 142
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 3 cut(s) 56, 201, 243
TasI AATT 1 cut(s) 79
TauI GCSGC 3 cut(s) 44, 47, 236
TscAI CASTG 2 cut(s) 172, 181
TseI GCWGC 2 cut(s) 280, 384
TspGWI ACGGA 2 cut(s) 91, 106
TspRI CASTG 2 cut(s) 172, 181
Tth111I GACNNNGTC 1 cut(s) 61
XceI RCATGY 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.