Rh3CG333100

THO complex subunit 4A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004491
Physical Location & Seq
Reverse (-)
37110980 .. 37113661
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG333100.1

Sequence Viewer

Length: 888 bp
ATGCCCTTCCCTCAGGACCGCCTGGACCTCCCTCTCGACGCCCTCATCGCCGAATCCAAGCAACAACGCCGTCACAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGCGGCGGAGGCTCCACCTCAGGCCCCTCTCGTCGGCCGATGAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCGGAAATGCAAGGACAGCCTGGACCCAGAAGGATTGAGCTGCCATTGGCTTTGAGCCAAGCGATGAACAGTGAGGGAAGCACCAAGCTTTATATATCTAACTTGGACTATGATGTTACCAATCGAGATATAGAGTTGCTCTTCTCTGAGGTTGGTGAATTGGAAAGGCACTCAATCCATTATGATAAAAGTGGAAGATCTAAGAAGGTTTGCATTGCTTCTGTTCAAGGAACAGCTGAAGTTGTCTATAAGCACTATTCAGATGCTCTAGCAGCAATCGAGAGATACAACAATCAGCATCTTGATGGAAAGAAAGTGGAAATTAAGCTTGTGGGACTCAATGTTGTTTCTCCTGTTCCTCTGCTTCTGCCTCCAAATACAAATTTCATGCAAGAACATCCAACTCCAGTCTTCCAGAGGCTAGGAAGAGCTGGTTCAAGGGGATCGTTTCATGGTCATGGTGGTGTTGGACTTGAAAGAGGCTGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCAGCAATGGAAGAATGTGACTGCAGAAAATCAGCAAAGGAAGAATGTGATTACAGAATCTGTTAAAAGGAAGAAAACATTTTATGGAGATACAACTGTGACTTTTGATGATCTGGATGCTGATTTGGAAAAATACCGCCTAAAATGTAGGCCGGTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168
Pfam Domains
Protein Families
FoP_duplication RRM_1

Protein Analysis

295

Amino Acids

32.93

Weight (kDa)

9.43

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 96 - 172 6.1e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AciI CCGC 5 cut(s) 19, 120, 123, 163, 862
AclWI GGATC 1 cut(s) 649
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 2 cut(s) 39, 182
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 3 cut(s) 425, 636, 674
AjnI CCWGG 2 cut(s) 21, 217
AluBI AGCT 5 cut(s) 238, 286, 434, 526, 629
AluI AGCT 5 cut(s) 238, 286, 434, 526, 629
AlwI GGATC 1 cut(s) 649
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 3 cut(s) 139, 152, 875
ApeKI GCWGC 2 cut(s) 238, 470
ApoI RAATTY 1 cut(s) 580
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 5 cut(s) 16, 25, 140, 221, 704
AsuHPI GGTGA 3 cut(s) 80, 365, 703
AvaII GGWCC 4 cut(s) 16, 25, 221, 704
AxyI CCTNAGG 2 cut(s) 12, 136
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BanI GGYRCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 601
BbvI GCAGC 2 cut(s) 225, 482
BccI CCATC 1 cut(s) 497
BceAI ACGGC 3 cut(s) 54, 169, 195
BciT130I CCWGG 2 cut(s) 23, 219
BciVI GTATCC 1 cut(s) 198
BfaI CTAG 2 cut(s) 467, 620
BfmI CTRYAG 3 cut(s) 172, 717, 747
BfoI RGCGCY 1 cut(s) 185
BfuI GTATCC 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 100
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 121, 239, 471
BlsI GCNGC 3 cut(s) 122, 240, 472
Bme1390I CCNGG 2 cut(s) 23, 219
Bme18I GGWCC 4 cut(s) 16, 25, 221, 704
BmgT120I GGNCC 5 cut(s) 16, 25, 140, 221, 704
BmiI GGNNCC 4 cut(s) 130, 142, 183, 223
BmrFI CCNGG 2 cut(s) 23, 219
BmsI GCATC 3 cut(s) 451, 505, 832
BpiI GAAGAC 1 cut(s) 601
BpmI CTGGAG 1 cut(s) 588
BsaHI GRCGYC 2 cut(s) 39, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 877
Bse1I ACTGG 1 cut(s) 605
Bse21I CCTNAGG 2 cut(s) 12, 136
Bse3DI GCAATG 2 cut(s) 411, 737
BseBI CCWGG 2 cut(s) 23, 219
BseGI GGATG 2 cut(s) 595, 847
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 2 cut(s) 411, 737
BseMII CTCAG 4 cut(s) 26, 150, 336, 740
BseNI ACTGG 1 cut(s) 605
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 225, 482
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 3 cut(s) 141, 154, 877
BshNI GGYRCC 1 cut(s) 181
BsiEI CGRYCG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 200, 878
BslFI GGGAC 1 cut(s) 546
BslI CCNNNNNNNGG 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 546
BsnI GGCC 3 cut(s) 141, 154, 877
Bsp143I GATC 3 cut(s) 395, 641, 835
BspACI CCGC 5 cut(s) 19, 120, 123, 163, 862
BspANI GGCC 3 cut(s) 141, 154, 877
BspCNI CTCAG 4 cut(s) 25, 149, 337, 739
BspLI GGNNCC 4 cut(s) 130, 142, 183, 223
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 1 cut(s) 649
BspQI GCTCTTC 2 cut(s) 344, 619
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 2 cut(s) 411, 737
BsrFI RCCGGY 1 cut(s) 877
BsrI ACTGG 1 cut(s) 605
BssAI RCCGGY 1 cut(s) 877
BssMI GATC 3 cut(s) 395, 641, 835
BssNI GRCGYC 2 cut(s) 39, 182
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 23, 219
Bst4CI ACNGT 3 cut(s) 110, 269, 823
Bst6I CTCTTC 2 cut(s) 344, 619
BstACI GRCGYC 2 cut(s) 39, 182
BstDEI CTNAG 5 cut(s) 12, 136, 345, 399, 726
BstF5I GGATG 2 cut(s) 595, 847
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 3 cut(s) 398, 644, 838
BstMBI GATC 3 cut(s) 395, 641, 835
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 470
BstNI CCWGG 2 cut(s) 23, 219
BstSCI CCNGG 2 cut(s) 21, 217
BstSFI CTRYAG 3 cut(s) 172, 717, 747
BstV1I GCAGC 2 cut(s) 225, 482
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BstZI CGGCCG 1 cut(s) 152
Bsu36I CCTNAGG 2 cut(s) 12, 136
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 141, 154, 877
BtgZI GCGATG 2 cut(s) 31, 275
BtsCI GGATG 2 cut(s) 595, 847
BtsIMutI CAGTG 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 5 cut(s) 16, 25, 140, 221, 704
CseI GACGC 1 cut(s) 47
CviAII CATG 3 cut(s) 586, 650, 656
DdeI CTNAG 5 cut(s) 12, 136, 345, 399, 726
DinI GGCGCC 1 cut(s) 183
DpnI GATC 3 cut(s) 397, 643, 837
DpnII GATC 3 cut(s) 395, 641, 835
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 344, 619
EarI CTCTTC 2 cut(s) 344, 619
EciI GGCGGA 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 152
Eco47I GGWCC 4 cut(s) 16, 25, 221, 704
Eco52I CGGCCG 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 456
Eco81I CCTNAGG 2 cut(s) 12, 136
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 21, 217
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 3 cut(s) 589, 653, 659
FaqI GGGAC 1 cut(s) 546
FatI CATG 3 cut(s) 585, 649, 655
Fnu4HI GCNGC 3 cut(s) 121, 239, 471
FokI GGATG 2 cut(s) 582, 854
Fsp4HI GCNGC 3 cut(s) 121, 239, 471
FspBI CTAG 2 cut(s) 467, 620
GlaI GCGC 1 cut(s) 183
GluI GCNGC 3 cut(s) 121, 239, 471
GsuI CTGGAG 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 3 cut(s) 141, 154, 877
HapII CCGG 2 cut(s) 200, 878
HgaI GACGC 1 cut(s) 47
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 2 cut(s) 39, 182
Hin1II CATG 3 cut(s) 589, 653, 659
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HindIII AAGCTT 2 cut(s) 284, 524
HinfI GANTC 4 cut(s) 53, 534, 722, 782
HpaII CCGG 2 cut(s) 200, 878
HphI GGTGA 3 cut(s) 80, 365, 703
Hpy166II GTNNAC 2 cut(s) 686, 883
Hpy188I TCNGA 3 cut(s) 346, 460, 708
Hpy188III TCNNGA 7 cut(s) 14, 35, 323, 478, 500, 613, 839
Hpy8I GTNNAC 2 cut(s) 686, 883
Hpy99I CGWCG 2 cut(s) 41, 153
HpyAV CCTTC 4 cut(s) 16, 222, 397, 703
HpyCH4III ACNGT 3 cut(s) 110, 269, 823
HpyCH4V TGCA 4 cut(s) 208, 411, 589, 749
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 470
HpyF3I CTNAG 5 cut(s) 12, 136, 345, 399, 726
Hsp92I GRCGYC 2 cut(s) 39, 182
Hsp92II CATG 3 cut(s) 589, 653, 659
HspAI GCGC 1 cut(s) 182
KasI GGCGCC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 395, 641, 835
LguI GCTCTTC 2 cut(s) 344, 619
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 2 cut(s) 225, 482
LweI GCATC 3 cut(s) 451, 505, 832
MaeI CTAG 2 cut(s) 467, 620
MaeIII GTNAC 5 cut(s) 71, 313, 712, 742, 823
MalI GATC 3 cut(s) 397, 643, 837
MboI GATC 3 cut(s) 395, 641, 835
MboII GAAGA 7 cut(s) 331, 405, 601, 636, 748, 778, 808
MflI RGATCY 1 cut(s) 395
MluCI AATT 3 cut(s) 356, 519, 580
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 528
MmeI TCCRAC 2 cut(s) 623, 646
MseI TTAA 2 cut(s) 522, 789
MslI CAYNNNNRTG 3 cut(s) 501, 654, 660
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 2 cut(s) 200, 878
MspR9I CCNGG 2 cut(s) 23, 219
MvaI CCWGG 2 cut(s) 23, 219
MwoI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 470
NarI GGCGCC 1 cut(s) 182
NdeII GATC 3 cut(s) 395, 641, 835
NlaIII CATG 3 cut(s) 589, 653, 659
NlaIV GGNNCC 4 cut(s) 130, 142, 183, 223
NmuCI GTSAC 3 cut(s) 71, 742, 823
PciSI GCTCTTC 2 cut(s) 344, 619
PfeI GAWTC 3 cut(s) 53, 722, 782
PkrI GCNGC 3 cut(s) 122, 240, 472
PleI GAGTC 1 cut(s) 528
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 21, 217
PspGI CCWGG 2 cut(s) 21, 217
PspN4I GGNNCC 4 cut(s) 130, 142, 183, 223
PspPI GGNCC 5 cut(s) 16, 25, 140, 221, 704
PstI CTGCAG 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 434
RseI CAYNNNNRTG 3 cut(s) 501, 654, 660
SapI GCTCTTC 2 cut(s) 344, 619
SaqAI TTAA 2 cut(s) 522, 789
SatI GCNGC 3 cut(s) 121, 239, 471
Sau3AI GATC 3 cut(s) 395, 641, 835
Sau96I GGNCC 5 cut(s) 16, 25, 140, 221, 704
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 2 cut(s) 23, 219
SfaNI GCATC 3 cut(s) 451, 505, 832
SfcI CTRYAG 3 cut(s) 172, 717, 747
SfoI GGCGCC 1 cut(s) 183
SinI GGWCC 4 cut(s) 16, 25, 221, 704
SmiMI CAYNNNNRTG 3 cut(s) 501, 654, 660
Sse9I AATT 3 cut(s) 356, 519, 580
SsiI CCGC 5 cut(s) 19, 120, 123, 163, 862
SspDI GGCGCC 1 cut(s) 181
SspMI CTAG 2 cut(s) 467, 620
StyD4I CCNGG 2 cut(s) 21, 217
TaaI ACNGT 3 cut(s) 110, 269, 823
TaqI TCGA 3 cut(s) 36, 322, 477
TasI AATT 3 cut(s) 356, 519, 580
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 3 cut(s) 53, 722, 782
Tru1I TTAA 2 cut(s) 522, 789
Tru9I TTAA 2 cut(s) 522, 789
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 3 cut(s) 71, 742, 823
TseI GCWGC 2 cut(s) 238, 470
Tsp45I GTSAC 3 cut(s) 71, 742, 823
TspDTI ATGAA 4 cut(s) 173, 278, 574, 638
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 4 cut(s) 16, 25, 221, 704
XapI RAATTY 1 cut(s) 580
XspI CTAG 2 cut(s) 467, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.