Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005010

Physical Location & Seq

Genomic Coordinates Forward (+)

4263482 .. 4265952

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCATCGTCTGGATCAGCCGACGAAGATTTCCAGTCTCGCGTTGCGAAGATCTTCGGATCTCTACCCTTCTCTCGTCCTTCGTCTTCCAAGTTTTCCACGTCGTCTTCTGCTCCGGCGTCGCGGCAGCAATCGGGGTCGGTGTGGACTCTCTCCGACACAGAGGTAGAGAAGCGGGAGTGGAAGCGAGATTCGTACGATAGAGACGAGATTCCTTGTGCTTCATCCTTTGACGAGCTCTTAAAACAGCAGAAGCCTTCCGAGGATGATCTCAAAGATATTGATTGCGGCGAGGATTTTGATGGTGTGTGGAGTATCAGAGCCTCCATGGGCCTTGATCGCACTCTCGATGACGAGGCAGAGGAAGATGAGTATGATAAAGTTGCACTAGGGGAAGAGAATGACGGTGAAGGCTGTGGGCGGATTCGGGATCCTCGTGCTAACTATGTTGCTGCAAGAATTAGGCTGAAGGAAGATGAAATTGAGGCTAACAAGTTTAATACTTCTGCAAGTCAACCTTCGGAAAGCAAAGAGCCACACGCAGAAGAATCATCCGAAGCTATGCCGCGAAAACCTATACTCAAAAGGAAGGAGAATAGTTCAGATTCAGAAGCAAGGACAAGTAAGCGAGTCAGGTTTGATTCTGTGCCTGAAGAAACATTGAAGAAGCCTGAAGATACTTGTTCAGCTTCTGCCTCGTCAAAAATCGTATCTCATCAGGGAAAAAGTGGTGCTCGGGTACCGGATTACTTGCTAAATCCTTCGAGTTACACCCGTTACAGCTTTGATCCATCTTGTGAATTGGATGTGGAGTCCCCAACAGGAGAGTACATGGACACTCCCAATGCTGTTGAAGGATTGAAAAATCCAGAGTCAGAATCATTTCCAAAAGTCTCCTTTATTCCGCAGAATAAGACCAAGGACGTAAGTGAAGACAGTAGTAACTGTAATGAGACGAAGCCTATCGTAGCTGGAGAGTTGGCAGAAGAAGAGAGACCAAGTGCAACAGAAGATGGGGATACTGAAATACGAGAATCAGAGAGCTGCACCAGTTTCCAAAGCAAAGGTCGTCAATATCGTGCCAAGCTTAGTTTAGATGAAACAGATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TSSC4

Protein Analysis

370

Amino Acids

41.06

Weight (kDa)

4.58

Isoelectric Point (pI)

60.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13310 AT5G13310
fragaria_vesca	FvH4_4g22730
malus_domestica	MD13G1129900.v1.1
prunus_persica	Prupe.1G216200_v2.0.a1
pyrus_communis	pycom13g11300
rosa_chinensis	RchiOBHm_Chr4g0428951
rosa_laevigata	RLG00000007111
rosa_multiflora	Rmu_co8308675.1_g000001 Rmu_sc0008629.1_g000001 Rmu_sc0014815.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370620
rosa_rugosa	Rorug04G0231000
rosa_samantha	Rh1DG096700 Rh3DG066500 Rh4AG287400 Rh4BG293300 Rh4CG309200 Rh4DG290400 Rh5AG269400 Rh5AG408600 Rh6BG138400 Rh6CG104200 Rh6CG135900 Rh6CG212700 Rh6CG397100 Rh6DG095000 Rh6DG122200
rosa_wichuraiana	Rw4G022110 Rw4G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	739
AccB1I	GGYRCC	1 cut(s)	739
AccII	CGCG	3 cut(s)	42, 124, 568
AciI	CCGC	6 cut(s)	124, 175, 288, 421, 566, 905
AclWI	GGATC	5 cut(s)	22, 67, 425, 438, 782
AcuI	CTGAAG	3 cut(s)	488, 672, 693
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	3 cut(s)	197, 741, 830
AgsI	TTSAA	3 cut(s)	664, 854, 862
AjiI	CACGTC	1 cut(s)	102
AluBI	AGCT	7 cut(s)	238, 560, 689, 783, 971, 1044, 1087
AluI	AGCT	7 cut(s)	238, 560, 689, 783, 971, 1044, 1087
Alw21I	GWGCWC	2 cut(s)	240, 736
Alw26I	GTCTC	5 cut(s)	42, 198, 898, 947, 988
AlwI	GGATC	5 cut(s)	22, 67, 425, 438, 782
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	735
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	127, 452, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	1051, 1083
Asp700I	GAANNNNTTC	2 cut(s)	53, 882
Asp718I	GGTACC	1 cut(s)	739
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	735
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	240
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	3 cut(s)	78, 99, 939
Bbv12I	GWGCWC	2 cut(s)	240, 736
BbvI	GCAGC	3 cut(s)	139, 439, 1031
BccI	CCATC	3 cut(s)	296, 799, 1007
BciVI	GTATCC	1 cut(s)	1012
BcoDI	GTCTC	5 cut(s)	42, 198, 898, 947, 988
BfaI	CTAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	1012
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	6 cut(s)	125, 128, 289, 453, 566, 1045
BlsI	GCNGC	6 cut(s)	126, 129, 290, 454, 567, 1046
BmeT110I	CYCGRG	1 cut(s)	735
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	432, 741
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	3 cut(s)	78, 99, 939
BpmI	CTGGAG	1 cut(s)	993
BsaHI	GRCGYC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	988
BsaJI	CCNNGG	3 cut(s)	261, 327, 918
BsaWI	WCCGGW	1 cut(s)	742
Bse1I	ACTGG	2 cut(s)	34, 1050
BseDI	CCNNGG	3 cut(s)	261, 327, 918
BseGI	GGATG	4 cut(s)	224, 271, 551, 811
BseNI	ACTGG	2 cut(s)	34, 1050
BseXI	GCAGC	3 cut(s)	139, 439, 1031
BsgI	GTGCAG	1 cut(s)	1030
Bsh1236I	CGCG	3 cut(s)	42, 124, 568
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	739
BsiHKAI	GWGCWC	2 cut(s)	240, 736
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	2 cut(s)	116, 743
BsiWI	CGTACG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	799
BsmAI	GTCTC	5 cut(s)	42, 198, 898, 947, 988
BsmBI	CGTCTC	2 cut(s)	198, 947
BsmFI	GGGAC	1 cut(s)	799
BsnI	GGCC	1 cut(s)	333
Bso31I	GGTCTC	1 cut(s)	988
BsoBI	CYCGRG	1 cut(s)	735
Bsp1286I	GDGCHC	2 cut(s)	240, 736
Bsp143I	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	6 cut(s)	124, 175, 288, 421, 566, 905
BspANI	GGCC	1 cut(s)	333
BspFNI	CGCG	3 cut(s)	42, 124, 568
BspLI	GGNNCC	2 cut(s)	432, 741
BspPI	GGATC	5 cut(s)	22, 67, 425, 438, 782
BspT107I	GGYRCC	1 cut(s)	739
BspTNI	GGTCTC	1 cut(s)	988
BsrI	ACTGG	2 cut(s)	34, 1050
BssECI	CCNNGG	3 cut(s)	261, 327, 918
BssMI	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
BssNI	GRCGYC	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	327, 918
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	407, 938, 947
Bst6I	CTCTTC	2 cut(s)	390, 984
BstACI	GRCGYC	1 cut(s)	119
BstDEI	CTNAG	1 cut(s)	1088
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	4 cut(s)	224, 271, 551, 811
BstFNI	CGCG	3 cut(s)	42, 124, 568
BstKTI	GATC	7 cut(s)	17, 54, 62, 271, 340, 433, 790
BstMAI	GTCTC	5 cut(s)	42, 198, 898, 947, 988
BstMBI	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstUI	CGCG	3 cut(s)	42, 124, 568
BstV1I	GCAGC	3 cut(s)	139, 439, 1031
BstV2I	GAAGAC	3 cut(s)	78, 99, 939
BstX2I	RGATCY	3 cut(s)	51, 59, 430
BstYI	RGATCY	3 cut(s)	51, 59, 430
BsuI	GTATCC	1 cut(s)	1012
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	4 cut(s)	224, 271, 551, 811
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	196, 740, 829
CviAII	CATG	2 cut(s)	328, 832
CviQI	GTAC	3 cut(s)	196, 740, 829
DdeI	CTNAG	1 cut(s)	1088
DpnI	GATC	7 cut(s)	16, 53, 61, 270, 339, 432, 789
DpnII	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
Eam1104I	CTCTTC	2 cut(s)	390, 984
EarI	CTCTTC	2 cut(s)	390, 984
EciI	GGCGGA	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	327, 918
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	988
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	3 cut(s)	488, 672, 693
Eco88I	CYCGRG	1 cut(s)	735
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	327, 918
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	327, 918
Esp3I	CGTCTC	2 cut(s)	198, 947
FaeI	CATG	2 cut(s)	331, 835
FaiI	YATR	6 cut(s)	329, 375, 447, 563, 578, 833
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	2 cut(s)	327, 831
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	6 cut(s)	125, 128, 289, 453, 566, 1045
FokI	GGATG	4 cut(s)	211, 278, 538, 818
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	6 cut(s)	125, 128, 289, 453, 566, 1045
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	6 cut(s)	125, 128, 289, 453, 566, 1045
GsuI	CTGGAG	1 cut(s)	993
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	2 cut(s)	116, 743
HgaI	GACGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	331, 835
HincII	GTYRAC	1 cut(s)	515
HindII	GTYRAC	1 cut(s)	515
HindIII	AAGCTT	1 cut(s)	1085
HpaII	CCGG	2 cut(s)	116, 743
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	147, 515
Hpy188III	TCNNGA	4 cut(s)	12, 347, 428, 869
Hpy8I	GTNNAC	2 cut(s)	147, 515
Hpy99I	CGWCG	3 cut(s)	26, 106, 124
HpyAV	CCTTC	9 cut(s)	79, 90, 267, 404, 463, 528, 583, 771, 848
HpyCH4III	ACNGT	3 cut(s)	407, 938, 947
HpyCH4IV	ACGT	2 cut(s)	101, 924
HpyCH4V	TGCA	5 cut(s)	386, 455, 509, 1004, 1047
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	1 cut(s)	1088
HpySE526I	ACGT	2 cut(s)	101, 924
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	331, 835
KpnI	GGTACC	1 cut(s)	743
Kzo9I	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
LmnI	GCTCC	1 cut(s)	118
Lsp1109I	GCAGC	3 cut(s)	139, 439, 1031
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	2 cut(s)	101, 924
MaeIII	GTNAC	3 cut(s)	767, 776, 941
MalI	GATC	7 cut(s)	16, 53, 61, 270, 339, 432, 789
MboI	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
MflI	RGATCY	3 cut(s)	51, 59, 430
MhlI	GDGCHC	2 cut(s)	240, 736
MluCI	AATT	3 cut(s)	459, 480, 800
MlyI	GAGTC	4 cut(s)	142, 639, 821, 881
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	9 cut(s)	157, 256, 286, 334, 349, 355, 444, 478, 706
MroXI	GAANNNNTTC	2 cut(s)	53, 882
MseI	TTAA	2 cut(s)	242, 498
MspI	CCGG	2 cut(s)	116, 743
MvnI	CGCG	3 cut(s)	42, 124, 568
MwoI	GCNNNNNNNGC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
NlaIII	CATG	2 cut(s)	331, 835
NlaIV	GGNNCC	2 cut(s)	432, 741
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 433, 1075
PdmI	GAANNNNTTC	2 cut(s)	53, 882
PfeI	GAWTC	8 cut(s)	191, 211, 424, 548, 605, 641, 878, 1034
Pfl23II	CGTACG	1 cut(s)	195
PkrI	GCNGC	6 cut(s)	126, 129, 290, 454, 567, 1046
PleI	GAGTC	4 cut(s)	142, 638, 820, 880
PpsI	GAGTC	4 cut(s)	142, 638, 820, 880
Psp124BI	GAGCTC	1 cut(s)	240
PspLI	CGTACG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	432, 741
PspPI	GGNCC	1 cut(s)	331
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	3 cut(s)	51, 59, 430
RsaI	GTAC	3 cut(s)	197, 741, 830
RsaNI	GTAC	3 cut(s)	196, 740, 829
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	242, 498
SatI	GCNGC	6 cut(s)	125, 128, 289, 453, 566, 1045
Sau3AI	GATC	7 cut(s)	14, 51, 59, 268, 337, 430, 787
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	4 cut(s)	142, 639, 821, 881
SduI	GDGCHC	2 cut(s)	240, 736
SfaNI	GCATC	1 cut(s)	14
Sse9I	AATT	3 cut(s)	459, 480, 800
SsiI	CCGC	6 cut(s)	124, 175, 288, 421, 566, 905
SspMI	CTAG	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	2 cut(s)	327, 918
TaaI	ACNGT	3 cut(s)	407, 938, 947
TaiI	ACGT	2 cut(s)	104, 927
TaqI	TCGA	2 cut(s)	348, 764
TasI	AATT	3 cut(s)	459, 480, 800
TatI	WGTACW	1 cut(s)	828
TauI	GCSGC	3 cut(s)	127, 291, 568
TfiI	GAWTC	8 cut(s)	191, 211, 424, 548, 605, 641, 878, 1034
Tru1I	TTAA	2 cut(s)	242, 498
Tru9I	TTAA	2 cut(s)	242, 498
TseI	GCWGC	3 cut(s)	127, 452, 1044
TspDTI	ATGAA	3 cut(s)	213, 492, 1113
XmnI	GAANNNNTTC	2 cut(s)	53, 882
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.