Rh3DG066500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005010
Physical Location & Seq
Reverse (-)
4473534 .. 4476564
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG066500.1

Sequence Viewer

Length: 303 bp
ATGAGAAAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTGAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCAACCATGGCTCTTATTTGAACTCTTACGATGTATTGGTTGGCAAGGATTCGCGTGCGAATCACCTGGCTTCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTACTTAAGCAACAGTTTACGAAATCACCTGAAGATGGCGGTCAGAAAGCTGTTGTTGTTCTCTGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TSSC4

Protein Analysis

100

Amino Acids

11.09

Weight (kDa)

4.82

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 142
AciI CCGC 1 cut(s) 270
AcuI CTGAAG 3 cut(s) 69, 210, 282
AfiI CCNNNNNNNGG 2 cut(s) 168, 266
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 2 cut(s) 153, 161
AluBI AGCT 3 cut(s) 53, 194, 281
AluI AGCT 3 cut(s) 53, 194, 281
ApeKI GCWGC 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 143, 249
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 155, 163
BfaI CTAG 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
Bme1390I CCNGG 2 cut(s) 155, 163
BmrFI CCNGG 2 cut(s) 155, 163
BmsI GCATC 1 cut(s) 175
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 266
Bse1I ACTGG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 2 cut(s) 155, 163
BseDI CCNNGG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 2 cut(s) 168, 266
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 168, 266
Bsp143I GATC 1 cut(s) 64
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 2 cut(s) 155, 163
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 94
BstFNI CGCG 1 cut(s) 142
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 44, 227
BstNI CCWGG 2 cut(s) 155, 163
BstSCI CCNGG 2 cut(s) 153, 161
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 144
CviAII CATG 1 cut(s) 95
CviJI RGCY 8 cut(s) 38, 53, 99, 158, 172, 194, 221, 281
CviKI_1 RGCY 8 cut(s) 38, 53, 99, 158, 172, 194, 221, 281
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 94
Eco57I CTGAAG 3 cut(s) 69, 210, 282
EcoRII CCWGG 2 cut(s) 153, 161
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 27, 77, 96
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 98
HinfI GANTC 2 cut(s) 137, 148
HphI GGTGA 2 cut(s) 143, 249
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 198, 276
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 227
HpyF3I CTNAG 1 cut(s) 195
Hsp92II CATG 1 cut(s) 98
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 8 cut(s) 140, 148, 154, 167, 175, 228, 273, 280
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 85
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 4 cut(s) 23, 29, 191, 275
MnlI CCTC 1 cut(s) 7
MseI TTAA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 155, 163
MvaI CCWGG 2 cut(s) 155, 163
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 44, 227
NcoI CCATGG 1 cut(s) 94
NdeII GATC 1 cut(s) 64
NlaIII CATG 1 cut(s) 98
PfeI GAWTC 2 cut(s) 137, 148
PkrI GCNGC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 153, 161
PspGI CCWGG 2 cut(s) 153, 161
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 155, 163
SetI ASST 5 cut(s) 55, 156, 196, 262, 283
SfaNI GCATC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 1 cut(s) 270
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 153, 161
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 246
TfiI GAWTC 2 cut(s) 137, 148
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 222
TseI GCWGC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 1 cut(s) 222
Vha464I CTTAAG 1 cut(s) 236
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.